BS23308.complete Sequence
686 bp assembled on 2011-01-25
GenBank Submission: KX805087
> BS23308.complete
GAAGTTATCAGTCGACATGATGCAATATCTTGTTGTTAGCCTGGCACTCT
GTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGCCCATTCAAGCC
ATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACCCAGGTCAAGGG
CAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGTCCATGTGCGCG
TCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCCACATTCACGAG
AAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCTCACTATAACCC
CGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCGTCATGTTGGCG
ATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCGACGTTACATAC
ACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATCATTGGCAGGGG
AGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGGCAACCACACGG
ATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCTGTGGTGTTATT
GGCATCAACTCGGATGTGGACGAGTGGCCATGTCGCGATGGTGGCGCCGG
CGCCCTGCGCTACTCCTTCTCCATCCTGACCGTCATCGTGGCCCTCATCA
TGGCCCGCAGCCTTGACTAAAAGCTTTCTAGACCAT
BS23308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod3-RD | 654 | CG9027-PD | 1..654 | 17..670 | 3270 | 100 | Plus |
| Sod3-RE | 732 | CG9027-PE | 1..542 | 17..558 | 2710 | 100 | Plus |
| Sod3-RA | 546 | CG9027-PA | 1..542 | 17..558 | 2710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod3-RD | 1095 | CG9027-RD | 107..760 | 17..670 | 3270 | 100 | Plus |
| Sod3-RE | 1228 | CG9027-RE | 107..648 | 17..558 | 2710 | 100 | Plus |
| Sod3-RA | 896 | CG9027-RA | 107..648 | 17..558 | 2710 | 100 | Plus |
| Sod3-RE | 1228 | CG9027-RE | 884..995 | 559..670 | 560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11381949..11382183 | 313..79 | 1160 | 99.6 | Minus |
| 2R | 25286936 | 2R | 11381663..11381893 | 536..306 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 11380682..11380793 | 670..559 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 11382249..11382311 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 2346..2418 | 567..637 | 126 | 65.8 | Plus |
BS23308.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:41 Download gff for
BS23308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9027-RD | 101..752 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:41 Download gff for
BS23308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod3-RD | 107..758 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:03 Download gff for
BS23308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sod3-RD | 107..758 | 17..668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:03 Download gff for
BS23308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11380684..11380793 | 559..668 | 100 | <- | Minus |
| 2R | 11381573..11381594 | 537..558 | 100 | <- | Minus |
| 2R | 11381663..11381891 | 308..536 | 100 | <- | Minus |
| 2R | 11381955..11382182 | 80..307 | 100 | <- | Minus |
| 2R | 11382249..11382311 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:41 Download gff for
BS23308.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7269168..7269396 | 308..536 | 100 | <- | Minus |
| arm_2R | 7268189..7268298 | 559..668 | 100 | <- | Minus |
| arm_2R | 7269078..7269099 | 537..558 | 100 | <- | Minus |
| arm_2R | 7269460..7269687 | 80..307 | 100 | <- | Minus |
| arm_2R | 7269754..7269816 | 17..79 | 100 | | Minus |
BS23308.pep Sequence
Translation from 16 to 669
> BS23308.pep
MMQYLVVSLALCATICSAAQTRNMPIQAIAYLIGPVQSDNTQVKGNVTFT
QNDCGQNVHVRVQLEGLKEGKHGFHIHEKGDLTNGCISMGAHYNPDKVDH
GGPDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGKLGIIGRGVVVHE
LEDDLGLGNHTDSKKTGNAGGRIACGVIGINSDVDEWPCRDGGAGALRYS
FSILTVIVALIMARSLD*
BS23308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sod3-PD | 217 | CG9027-PD | 1..217 | 1..217 | 1145 | 100 | Plus |
| Sod3-PE | 243 | CG9027-PE | 1..181 | 1..181 | 961 | 100 | Plus |
| Sod3-PA | 181 | CG9027-PA | 1..180 | 1..180 | 955 | 100 | Plus |
| Sod3-PB | 181 | CG9027-PB | 1..180 | 1..180 | 955 | 100 | Plus |
| Sod-PA | 153 | CG11793-PA | 10..150 | 40..180 | 374 | 55.3 | Plus |
