BS23313.complete Sequence
2225 bp assembled on 2011-02-18
GenBank Submission: KX805421
> BS23313.complete
GAAGTTATCAGTCGACATGACGGAATCTGGAATCGATTTGGGCTTTGATA
TGGAGTTTGATCTAAATATAAACTTGTTGAATGATAACGACAATATGGAT
TTCTTACCAAATGTTACTGAGAATATGGAGTTCTATGAATTGAAATCATC
ATCACGCTGTATACGGCATAATGAAATACCGACATTTAAAACTGCTACTC
CCACTTCACGAACACAACTAAAACTGCAGCTACAACGTGAACAACAGCAA
CAAATGATGATACAACAACAGACATTAGACACTGCTATGGACCCAAAAAT
GCATCTATTGTTTGGCAGTGGGCAGGGGCTTATGGAATCGGAATTCATTG
ACAGCGGTAGTACCAGTGCTTGTGGCAGCGGGTCATCCAGTTTAGAACAA
ATGTCACAGTTAGTGCAAATGGACAATTTAATTGATTCGTCAAGTGGAGC
CAAGCTTAAAGTTCCTCTTCAAAGTATCGGAGTAGATGTGCCACCCCAAG
TGCTGCAGGTCAGTACAGTGCTTGAAAACCCTACAAGGTATCACGTTATC
CAAAAGCAAAAGAATCAAGTGAGGCAATATCTCAGCGAATCCTTTAAGCC
GTCTATGTGGGGCAGTCATACCAGCGAAATAAAATTAGCAAATAATTCTG
CGTCAACGGGAAATCTTCAAAATTCATCTTTACAGAAAGGTATTTGCGAT
CCATTGGAGCGTACAAACCGATTTGGATGCGATTCGGCTGTGAGTGCTAA
AAGAATTATGCCTTCCGATGACGCAATGCCTATTTCCCCATTCGGTGGTA
GTTTTGTACGATGTGATGACATAAATCCAATTGAGCCAACTGTATTACGA
CCTAATAGTCATGGTGCTGGGGAACCAGAAAATGCACATAGAACGGCCCA
GTTGGGACTTAGTAAAGCTAATTCAAGCCTAAGTTCAACGCGTTCTTCTT
CAGGGATTGTTAATTCAATTCGAATTTCCAGTACATCAAGCTCGTTACAG
TCTACCTCAGCTCCTATTTCGCCGAGCGTAAGTTCGGTTGCAACGAGTGT
CTCTGAGCTACCATCATTCGACAGCGATCCAGATGACATCTTCGATGATA
TATTACAAAATGACTCTTTTAACTTTGATAAAAACTTCAACTCTGAGCTT
TCAATTAAACAGGAACCTCAAAATTTAACTGATGCTGAAATGAATGCCCT
AGCCAAGGACAGACAAAAGAAAGACAACCATAATATGATTGAGCGAAGGC
GACGCTTTAATATAAATGACAGAATAAAAGAGCTTGGTACCCTTTTGCCA
AAGGGCAGTGATGCTTTTTACGAAGTAGTTCGAGACATTCGTCCAAACAA
GGGGACAATCTTGAAGTCCTCTGTTGACTACATTAAATGCTTGAAACATG
AGGTGACTCGCTTAAGACAAAATGAGTTACGTCAACGTCAAGTAGAGTTG
CAAAATCGAAAGCTCATGTCTCGAATAAAAGAATTGGAAATGCAGGCCAA
GTCCCATGGAATTTTGTTATCAGAAAACCACCTAACATCACTATCAGCGC
CTACTCAACCTTATCTTAAAAGTTTTAGCCTGTCTCCTACTGCTTCTCGG
AGTCGTCGATCACTTTTTGACCAACCTGTTGAAAAAAAAATACAAGTTAT
TGATGGTGCCGATGGAAATATGGGAATGAATCAGGTTGATGAGTTTATGG
AAGATTGCAAGTATGCAGTACAAGGCGGCGATCCGATGTTGTCCTCGCAT
AGTCACATGCAATCCGCGCCACAATCACCGAGTTCAAAAACTTTGAATAG
TGGAAGTTTTGAACCAAAGAATTTTTCGGAGGCTGATGAAAGCCTTTTTA
GAGGCAAATCAAGTTTAGCATCAGATGACTGTTGCGGTATAAATTGCAGT
ACTTCGTGCTATATTCAACACCAATTGACTTCGCGTGAGGGCCATCCAAA
TCATTCTCACCACACGGGTATACGAGAAATTCATAGTTTGTCTGATTCGG
CTCAAAACTCAGAGTTTAGTAGGCTTGAGCATTGCGATGATCCACTTCTC
TCATCTTCCCATAGGTCACTTGGCACCGTAGACGAAGATCAACATAATTC
AGTTGATATGTCTGCAGTCATGGTACACGACTCCCTATCCTCTTTGGTAG
ATGACAACAATAGCGAAACAATGGTTCTTGCATCTGACACATTGGATATT
GAGTTATAAAAGCTTTCTAGACCAT
BS23313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mitf-RB | 2193 | CG43369-PB | 1..2193 | 17..2209 | 10965 | 100 | Plus |
| Mitf-RA | 2193 | CG43369-PA | 1..2193 | 17..2209 | 10965 | 100 | Plus |
| Mitf-RC | 2514 | CG43369-PC | 504..2514 | 178..2209 | 9810 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mitf-RB | 3009 | CG43369-RB | 158..2351 | 17..2210 | 10970 | 100 | Plus |
| Mitf-RA | 4032 | CG43369-RA | 164..2357 | 17..2210 | 10970 | 100 | Plus |
| Mitf-RC | 3226 | CG43369-RC | 557..2568 | 178..2210 | 9815 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1222218..1222792 | 1636..2210 | 2860 | 99.8 | Plus |
| 4 | 1348131 | 4 | 1220260..1220688 | 629..1057 | 2145 | 100 | Plus |
| 4 | 1348131 | 4 | 1219694..1220026 | 178..510 | 1665 | 100 | Plus |
| 4 | 1348131 | 4 | 1221708..1221950 | 1239..1481 | 1215 | 100 | Plus |
| 4 | 1348131 | 4 | 1199015..1199175 | 17..177 | 805 | 100 | Plus |
| 4 | 1348131 | 4 | 1221491..1221650 | 1079..1238 | 800 | 100 | Plus |
| 4 | 1348131 | 4 | 1222006..1222164 | 1481..1639 | 795 | 100 | Plus |
| 4 | 1348131 | 4 | 1220073..1220199 | 506..632 | 620 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-27 10:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6847 | 190..271 | 151 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6814 | 174..271 | 141 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2476 | 145..270 | 132 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2431..2531 | 175..278 | 125 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2425 | 188..270 | 120 | 61.9 | Plus |
BS23313.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:01 Download gff for
BS23313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mitf-RB | 158..2348 | 17..2207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:14 Download gff for
BS23313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mitf-RA | 164..2354 | 17..2207 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:09 Download gff for
BS23313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mitf-RA | 164..2354 | 17..2207 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:09 Download gff for
BS23313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1222006..1222164 | 1481..1639 | 100 | -> | Plus |
| 4 | 1199015..1199175 | 17..177 | 100 | -> | Plus |
| 4 | 1219694..1220024 | 178..508 | 100 | -> | Plus |
| 4 | 1220076..1220195 | 509..628 | 100 | -> | Plus |
| 4 | 1220260..1220688 | 629..1057 | 100 | -> | Plus |
| 4 | 1221262..1221282 | 1058..1078 | 100 | -> | Plus |
| 4 | 1221491..1221650 | 1079..1238 | 100 | -> | Plus |
| 4 | 1221708..1221949 | 1239..1480 | 100 | -> | Plus |
| 4 | 1222222..1222789 | 1640..2207 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:14 Download gff for
BS23313.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1219641..1219801 | 17..177 | 100 | -> | Plus |
| arm_4 | 1223420..1223750 | 178..508 | 100 | -> | Plus |
| arm_4 | 1223802..1223921 | 509..628 | 100 | -> | Plus |
| arm_4 | 1223986..1224414 | 629..1057 | 100 | -> | Plus |
| arm_4 | 1224988..1225008 | 1058..1078 | 100 | -> | Plus |
| arm_4 | 1225217..1225376 | 1079..1238 | 100 | -> | Plus |
| arm_4 | 1225434..1225675 | 1239..1480 | 100 | -> | Plus |
| arm_4 | 1225732..1225890 | 1481..1639 | 100 | -> | Plus |
| arm_4 | 1225948..1226515 | 1640..2207 | 100 | | Plus |
BS23313.pep Sequence
Translation from 16 to 2208
> BS23313.pep
MTESGIDLGFDMEFDLNINLLNDNDNMDFLPNVTENMEFYELKSSSRCIR
HNEIPTFKTATPTSRTQLKLQLQREQQQQMMIQQQTLDTAMDPKMHLLFG
SGQGLMESEFIDSGSTSACGSGSSSLEQMSQLVQMDNLIDSSSGAKLKVP
LQSIGVDVPPQVLQVSTVLENPTRYHVIQKQKNQVRQYLSESFKPSMWGS
HTSEIKLANNSASTGNLQNSSLQKGICDPLERTNRFGCDSAVSAKRIMPS
DDAMPISPFGGSFVRCDDINPIEPTVLRPNSHGAGEPENAHRTAQLGLSK
ANSSLSSTRSSSGIVNSIRISSTSSSLQSTSAPISPSVSSVATSVSELPS
FDSDPDDIFDDILQNDSFNFDKNFNSELSIKQEPQNLTDAEMNALAKDRQ
KKDNHNMIERRRRFNINDRIKELGTLLPKGSDAFYEVVRDIRPNKGTILK
SSVDYIKCLKHEVTRLRQNELRQRQVELQNRKLMSRIKELEMQAKSHGIL
LSENHLTSLSAPTQPYLKSFSLSPTASRSRRSLFDQPVEKKIQVIDGADG
NMGMNQVDEFMEDCKYAVQGGDPMLSSHSHMQSAPQSPSSKTLNSGSFEP
KNFSEADESLFRGKSSLASDDCCGINCSTSCYIQHQLTSREGHPNHSHHT
GIREIHSLSDSAQNSEFSRLEHCDDPLLSSSHRSLGTVDEDQHNSVDMSA
VMVHDSLSSLVDDNNSETMVLASDTLDIEL*
BS23313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mitf-PB | 730 | CG17469-PB | 1..730 | 1..730 | 3736 | 100 | Plus |
| Mitf-PA | 730 | CG17469-PA | 1..730 | 1..730 | 3736 | 100 | Plus |
| Mitf-PD | 704 | CG43369-PD | 1..704 | 1..730 | 3561 | 96.4 | Plus |
| Mitf-PC | 837 | CG43369-PC | 169..837 | 55..730 | 3395 | 99 | Plus |
