BS23316.complete Sequence
950 bp assembled on 2011-02-07
GenBank Submission: KX805404
> BS23316.complete
GAAGTTATCAGTCGACATGTCGCCACCACGACACATTTTGAAGCTCAGCC
TCGAGGAGCAGCGGCAGTTCATCGATTCCTTCGATTTGGTGATCAGCGAC
TGCGATGGCGTCGTCTGGCTCCTGGTGGGCTGGATTCCCAACACGGGAGC
CGCCGTCAATGCCTTGAAAGCGGCCGGCAAGCAGATCAAGTTCGTGTCGA
ACAACAGCTTCCGGTCCGAGGAGGATTACATGGAGAAGTTTCGCCACATC
GGCGCCAAGAACGTCCAGGAGGACGACATCGTTCATCCGGTGAAGACCAT
TGTCCGGTACCTGAAGAAGCACAAGCCGGGGGAGCGGGTATACTCCCTCA
TGTCCCTCGAAGCGAACGAAACGTTACGTAAGCACAACATCGAGTTTGAA
TCGCTGCAAGTCAAGGAGCACCTGACGGCCGCGTCGCTGGTGGATCACCT
GGCCATTGAAAAGCCCGTGGGCGCTGTGCTATTCGACATCCACTTGGACC
TCTCGTACGTGGAGCTGGCGAAGGCCATTAGGCACCTTCAGGAGAATGAC
GACTGCCAGTTGATAGCCGGCGGCAGCGATGTCATCATGCCACTGGCGGA
GAATCTCAATGTGGCCGGGTTCTTTGACTTCCTGGAGCACGTTAAACGCT
ACACGCAACGCGAGGCCACGTTTCTGGGCAAGCCGTCTCCCATTTTGGGC
GAAATGTTTGGCGAAATGTTCGAGATTCGTGATTGCAAGCGCTGCATCTT
CATCGGGGACACACTGGTGCAGGATGTGCAGTTCGGCAAGGCCTGCGGCT
TCCAGTCCCTGCTGGTACTTAGCGGCTGCCTAACAAAGGAGGACATGCTG
AACGCCCCGGTGGAAGCGCAGCCGGATTACTATGCCGATAGCCTGGCCGA
CTTCACGCAGCTGCTTGAAAATATTCAAAAATAGAAGCTTTCTAGACCAT
BS23316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2680-RB | 918 | CG2680-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2680-RB | 1181 | CG2680-RB | 85..1003 | 16..934 | 4595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2706329..2706857 | 934..406 | 2645 | 100 | Minus |
| X | 23542271 | X | 2706953..2707343 | 406..16 | 1955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:17:41 has no hits.
BS23316.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 12:15:40 Download gff for
BS23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2680-RB | 76..985 | 17..926 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:20 Download gff for
BS23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2680-RB | 86..995 | 17..926 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:49 Download gff for
BS23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2680-RB | 86..995 | 17..926 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:49 Download gff for
BS23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2706337..2706856 | 407..926 | 100 | <- | Minus |
| X | 2706953..2707342 | 17..406 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:20 Download gff for
BS23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2600370..2600889 | 407..926 | 100 | <- | Minus |
| arm_X | 2600986..2601375 | 17..406 | 100 | | Minus |
BS23316.pep Sequence
Translation from 16 to 933
> BS23316.pep
MSPPRHILKLSLEEQRQFIDSFDLVISDCDGVVWLLVGWIPNTGAAVNAL
KAAGKQIKFVSNNSFRSEEDYMEKFRHIGAKNVQEDDIVHPVKTIVRYLK
KHKPGERVYSLMSLEANETLRKHNIEFESLQVKEHLTAASLVDHLAIEKP
VGAVLFDIHLDLSYVELAKAIRHLQENDDCQLIAGGSDVIMPLAENLNVA
GFFDFLEHVKRYTQREATFLGKPSPILGEMFGEMFEIRDCKRCIFIGDTL
VQDVQFGKACGFQSLLVLSGCLTKEDMLNAPVEAQPDYYADSLADFTQLL
ENIQK*
BS23316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2680-PB | 305 | CG2680-PB | 1..305 | 1..305 | 1578 | 100 | Plus |
| CG15739-PB | 308 | CG15739-PB | 1..305 | 1..305 | 491 | 37.7 | Plus |
| CG15739-PA | 308 | CG15739-PA | 1..305 | 1..305 | 491 | 37.7 | Plus |
| CG10352-PB | 315 | CG10352-PB | 1..295 | 1..293 | 388 | 35.1 | Plus |
| CG5567-PA | 330 | CG5567-PA | 23..324 | 6..302 | 296 | 27.8 | Plus |
