BS23317.complete Sequence
2309 bp assembled on 2011-02-18
GenBank Submission: KX806404
> BS23317.complete
GAAGTTATCAGTCGACATGATGGCAGCCAGCGGGCGGATTCGCAAGCGAA
AGCATAAAAGCCATACAAGTGGCGACGTTCCCAGTACGACGACTAGTGTA
CCCATGCCCATTCCGACCATGGCGCCGGGGAAAATGGTCGCGGAGACAAT
GGAGGAAGCCGCCGCCCTCGCCGGGGATTACAATAATTTCACGCATAATT
TCGTCGATTTGCAGAACCTCTTGAGTTTCAACGAATTGAATGGCACTAGT
GGTAGCGGTGGGACTGCTGTCAGCTCCTTGGGCTCATCGAGTGCCATTAA
ACTGAATAACAGCGCCATTACGGACACTCTGCTGGGCACGGTTCTCACTA
CGGCCACGGCCACGGTGGCTCCGGCGGCCAGTTCGCTGCTAGCCACCTTG
GCGGCCACCACAACAGCATCTGCGAGAGGATCCCTGGCGGGCAAGTCGCT
GGCCATCGCAGACGCCACTTCATCCACCTACTATTCCAACTTGCTGAACC
TATCGCCGGCGACCACCAGCTTGATCTCGGCGGCTGCGGCCACCAAGTCG
TACAACGACAGTGCCCTCCGGTGGGAGCAGCTGGACGGGAGCGTGGACTT
CGGATTCGACCCACTCTACCGTCACTCGCTGGCCATGTCCATGGTCTACT
GCGTGGCCTACATCGTCGTCTTCCTGGTGGGACTCATCGGGAATAGCTTC
GTGATCGCCGTCGTCCTGCGGGCTCCTCGCATGCGGACGGTGACGAACTA
CTTCATTGTGAATCTGGCCATTGCGGACATCCTGGTCATTGTCTTCTGCC
TGCCAGCCACACTGATTGGCAACATCTTTGTGCCCTGGATGCTCGGATGG
CTGATGTGCAAGTTTGTGCCCTACATACAAGGTGTCTCCGTGGCAGCCTC
GGTCTACAGCCTGATTGCCGTTTCCCTGGACAGGTTCATTGCCATCTGGT
GGCCCCTGAAGCAGATGACAAAGCGACGTGCCCGCATCATGATAATCGGC
ATATGGGTAATCGCGCTGGTGACCACCATTCCTTGGCTGCTCTTCTTCGA
CCTGGTGCCCGCCGAGGAGGTCTTCTCCGACGCCCTGGTCTCGGCCTACT
CGCAGCCGCAGTTCCTCTGCCAGGAGGTGTGGCCCCCGGGCACGGATGGG
AACCTCTACTTCCTGCTAGCCAACCTGGTGGCCTGCTACCTGCTGCCCAT
GTCCCTGATCACGCTCTGCTACGTGCTCATCTGGATCAAGGTCTCCACGA
GGTCCATCCCCGGCGAGTCCAAGGACGCGCAAATGGACCGCATGCAGCAG
AAGAGCAAGGTGAAGGTCATCAAGATGTTGGTGGCCGTGGTCATCCTGTT
TGTTTTGTCCTGGCTGCCGCTCTATGTCATCTTTGCGCGGATCAAATTCG
GCTCGGACATCTCGCAGGAGGAGTTCGAGATCCTCAAGAAGGTGATGCCG
GTGGCCCAGTGGCTGGGCTCCTCGAACAGCTGCATCAACCCCATACTCTA
CTCAGTGAACAAGAAGTACCGACGCGGATTCGCGGCCATCATCAAGTCGC
GCAGCTGCTGCGGACGCCTCAGGTACTACGACAACGTGGCCATCGCCTCC
AGCACCACCAGCACCCGGAAGTCATCGCACTACCACCAGAACAGCTCGAG
GAAGAGTCCGAGCAGCAAGGGCAACGCGGTGTCCTACATCTACGAGCACA
ACTCGCTGCGGCGCCACAACATGATGCTCAAGCAGGACAGCAACCTGTCG
CAGCAGATGCTGCTTAAGCAGGACTCTCACGGATCGCGTCAGTTCCTCAT
CAAGCAGGAGAGCTCCTGCAGTGATGCTTCTGGGATCCGGCGACCCCTCT
GCCAGCAGGACAGCAATGGCTCCAAGGTCTCCCTGTCCAAGCAGGACTCA
ATTGTGTCCTACATGGAGGCACGCAGGTCGGCAGGACACGGTCTCAACGA
CACACTGGTGGACAGGGATAGCGTTTCCATGGATGTGGGCCGGCGACAGG
GCGCCACACCGAGCTCTCTGCTCGATAAGCGGCAGAAGTTCGTAAAGCAG
GACTCGGTGATCTCGTTTGTGGACCAGCGACCAGAGCAAAGGCGCCATCA
ACTGGTGAAGCAGGACTCGGTCATCTCCTTCGCCGACCAGCGACGCGGCC
TGCTCCACAAACAGGACTCGCTGATGGCCAACCGGACGGGTGATGCACCC
ACCCACCACGTTTCCATTCTGAAGAAGACCGACTCGCAGCTCAGCTACGG
CAGTTCGACTTCTCCTCGCAGGAATGCGGATCTCTACGAATAGAAGCTTT
CTAGACCAT
BS23317.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIFaR-RC | 2277 | CG10823-PC | 1..2277 | 17..2293 | 11385 | 100 | Plus |
| SIFaR-RA | 2277 | CG10823-PA | 1..2277 | 17..2293 | 11385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIFaR-RC | 5029 | CG10823-RC | 294..2570 | 17..2293 | 11385 | 100 | Plus |
| SIFaR-RA | 4792 | CG10823-RA | 228..2504 | 17..2293 | 11385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21291318..21292068 | 767..17 | 3755 | 100 | Minus |
| 3R | 32079331 | 3R | 21279123..21279845 | 2293..1571 | 3615 | 100 | Minus |
| 3R | 32079331 | 3R | 21279966..21280609 | 1574..931 | 3220 | 100 | Minus |
| 3R | 32079331 | 3R | 21284076..21284177 | 935..834 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 21291172..21291239 | 833..766 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:12:29 has no hits.
BS23317.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:02 Download gff for
BS23317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIFR-RC | 294..2570 | 17..2293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:29 Download gff for
BS23317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIFR-RA | 228..2504 | 17..2293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:45 Download gff for
BS23317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIFaR-RA | 228..2504 | 17..2293 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:45 Download gff for
BS23317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21279123..21279843 | 1573..2293 | 100 | <- | Minus |
| 3R | 21279968..21280606 | 934..1572 | 100 | <- | Minus |
| 3R | 21284078..21284177 | 834..933 | 100 | <- | Minus |
| 3R | 21291172..21291238 | 767..833 | 100 | <- | Minus |
| 3R | 21291319..21292068 | 17..766 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:29 Download gff for
BS23317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17104845..17105565 | 1573..2293 | 100 | <- | Minus |
| arm_3R | 17105690..17106328 | 934..1572 | 100 | <- | Minus |
| arm_3R | 17109800..17109899 | 834..933 | 100 | <- | Minus |
| arm_3R | 17116894..17116960 | 767..833 | 100 | <- | Minus |
| arm_3R | 17117041..17117790 | 17..766 | 100 | | Minus |
BS23317.pep Sequence
Translation from 16 to 2292
> BS23317.pep
MMAASGRIRKRKHKSHTSGDVPSTTTSVPMPIPTMAPGKMVAETMEEAAA
LAGDYNNFTHNFVDLQNLLSFNELNGTSGSGGTAVSSLGSSSAIKLNNSA
ITDTLLGTVLTTATATVAPAASSLLATLAATTTASARGSLAGKSLAIADA
TSSTYYSNLLNLSPATTSLISAAAATKSYNDSALRWEQLDGSVDFGFDPL
YRHSLAMSMVYCVAYIVVFLVGLIGNSFVIAVVLRAPRMRTVTNYFIVNL
AIADILVIVFCLPATLIGNIFVPWMLGWLMCKFVPYIQGVSVAASVYSLI
AVSLDRFIAIWWPLKQMTKRRARIMIIGIWVIALVTTIPWLLFFDLVPAE
EVFSDALVSAYSQPQFLCQEVWPPGTDGNLYFLLANLVACYLLPMSLITL
CYVLIWIKVSTRSIPGESKDAQMDRMQQKSKVKVIKMLVAVVILFVLSWL
PLYVIFARIKFGSDISQEEFEILKKVMPVAQWLGSSNSCINPILYSVNKK
YRRGFAAIIKSRSCCGRLRYYDNVAIASSTTSTRKSSHYHQNSSRKSPSS
KGNAVSYIYEHNSLRRHNMMLKQDSNLSQQMLLKQDSHGSRQFLIKQESS
CSDASGIRRPLCQQDSNGSKVSLSKQDSIVSYMEARRSAGHGLNDTLVDR
DSVSMDVGRRQGATPSSLLDKRQKFVKQDSVISFVDQRPEQRRHQLVKQD
SVISFADQRRGLLHKQDSLMANRTGDAPTHHVSILKKTDSQLSYGSSTSP
RRNADLYE*
BS23317.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIFaR-PC | 758 | CG10823-PC | 1..758 | 1..758 | 3837 | 100 | Plus |
| SIFaR-PA | 758 | CG10823-PA | 1..758 | 1..758 | 3837 | 100 | Plus |
| RYa-R-PC | 467 | CG5811-PC | 101..431 | 204..542 | 509 | 35 | Plus |
| RYa-R-PB | 518 | CG5811-PB | 101..431 | 204..542 | 509 | 35 | Plus |
| RYa-R-PA | 464 | CG5811-PA | 101..411 | 204..517 | 500 | 36.1 | Plus |
