BS23320.complete Sequence
2939 bp assembled on 2011-02-18
GenBank Submission: KX805526
> BS23320.complete
GAAGTTATCAGTCGACATGAGGATGAGGATGAGGTGCTTCTCCCGGGCTA
TCAACTGGTGTTGTGCTCTTTTCTGGATCGCCTTACAAATTCCAGTGCCC
ATCTGCTCGCTGACCACCGCGGCCACAAATCCCTCGCAGCTGCCAACGCC
GCACACTTTTCGCTTCCAGAATCCGACGCAGTGCCTCAAGAACGAGTTCT
ACAACCTCAACCTATTCGACTGTGTGCCCTGCAATGAGGTCGCCGGCGGA
GATGGGGTTCAAGGAAAACTGCAACCCGACAAATTCACCTGCAAGTGCCC
GGCTGGTCATCTGTCCATCTATGAGCGCGGCAAGACGTGGCCCACCTGCG
ATGAGATTTGCACTCCGGACAGGAGCGACAATTGCACTTCGGTGTGGCTA
CCCCAGCCTCGACCTACCAATCAGTGCAGCTATCGGTATCTGAACTCCAC
GGCAGCCTTCGCCAGTCAGTTGCCAGTGCATCCACTCATTTCCGGCATCA
TACTGACCCATACAAATCCGATGAGCAGAGCGGGAGATTGCCATTCCTGC
GATATGACGCACAATTTCCGGTATCAGGACTTCTGCTTGGCTAGCACCCT
GCTCCGACCGTATGTGCACTACAACGCCTTCTGGCAGGCGACAACCACGC
CGGATTCAAGTGCACCCAGCCGCTTTGGTGAGCTCAAGTTTGTGGCCTTC
TTTTGCCTGACACTGCGCAACGATACCGCCTGCCAGCAACTGGCCAATCT
GTGCGTGCTTTCCCATTTCTCCCTGGAAAAGCACTCGCCCTGCAGCGCCT
TCCTGCTTACCCAGGTCTCTGATGTGGTCATGAAGTATGCCCACTCCGGC
GAACAGGTGCGATCCCTGCAGCCGTTCCTGTTCTACAAGAAGGGTCGGGC
TACCAAGGAGCTGCTTTCGAAGACGCTTCAGCTGCCGGATCGCAAGGAGC
TGCGCCTTTTTAGCACCACATTTGGTCTAGATGGCGGACTCAAACGGTGG
GGTGCCTTTCATCCGGAGATGCTGAACATGTGCCAACAGAAGGCGCCTAG
CCTCCGAGTGGCTCTACCCAAGAGGGAGTCGGAGGTATCTTGTCAGCTGA
CCCTAGAGCGTCTCATTGACCTGGCCAACCAACGGCACAACGCCGAGTTT
CTCACCGTGTTTCTAAACTTCAGTAGTAACTGGCAGTATTTGCTTCACCA
GTTACCTGTACTCATCGAGACCCTGACGCCGGAAAACCAGCGACCCCAGC
AGGAGGAGTGGCAGTTGGTGAAACGTTTCCAGCTGATCTCCGCCTCGCCG
CGGGATAGTCATCTTCACCAGACCATGCCGCGCTACGAGGATGCCCACAA
GCTGCAGCAATATTACTCCTTACGATATGTGGAGGACATCGAAATTCGTT
ATACGCTGGACAAGGATCAGCCGGATAGAGTGGGTCTGCCGCTCATTCGC
CTGCGATACCGACACATAGAGATGGGATCGGGAAATATATCGCTCTCCCA
ACTGTACCCATTCACCCTGAGGATTAGCTACGACCAAGTAAAACGTGGTT
GGGATTGGTTGATCTTGGAGGTGGCGCTGCCGCTGCTCCTTTTGCTGGCC
TTTGCAGCTGCTGTCTTCCGTCTCCAGAATTTGAGAAGAAGGCGGAAGGC
GGACCTCTGTCAGATGAGCAGTCTTATGGAATTTCTCCTGCAGCTGGCCG
GAAATGTGGCATATGCTCTGCTGGCGACTACTCTGCTGCTCCTACTGCTG
CAAGCCTCCAATTCTCGCCTACTGAAAATCCTACTCAATACCGCCTTTGT
GCTGCAGTTCCTCTTTCTGGGCATCCACCTGTGGCGCTCCAGCCAGCTGG
AACTGTTTCTCATCGACTGGGAAAGACCGCGGAGCAGCTGCGAAGGACAA
CGCCTGAATCTGGACAGCTCATCTCTCTGCTCTAGCGTGCGCACCTTTGT
GGCCGAGAGCAGCGTCTCCGCCTGGCGAGTTCTCTTCACGGCCAATGCCT
GGATTCGCCTAAGTGTCACCCAGAAGTACTCCACCTTGGGTCAGGTATTT
GTGGTCATCGCTGGCTATCAGTTTCTGGAGAGGTTTACCAAGGGTGACAT
TTTTCTACGTTGCTGCCTTATAGCGGCAGCTTATCTGCTCACATATCTAC
TTCAGATAATAGGCCACCAACTGTTTATAGCCAATCCCCTCCAGAAGTTC
ATCGACCTGTGCAGTCTGGCCAACATCTCTCTGTTCTCACTGACGGAGCC
AGGATTTGGTTACTACATCCACGGACGATCTCCGCACGGCTTTGCCGATA
CGGATATGTCCTCGATGATTTTGCAGCTTCAGAGAACCCAGACCATGTGT
GGGCGACGAGGATTGCTAATGGACTCGGACAAGCAGGCGTACGTCATCCT
GCCTCCCAGAAACCTTCACATCTACCTGGAGCGACTCCTGCTTCCCTTTC
AGCGCAGTCTGACCGGCACCCTTTCGCAGACCATGCTCTACCAAAAGGAC
ATCGTTCCGAGCATCGATGGACAGATGGAACGTACCTCCATTGCGTACGC
CAGCGTCAATCGCTTCTTCTGCGCCTTTATCGACCATGCTATCAAGGACA
TGGATTACATTATTAAGGAAAAGTCGTTTGTGGAACAATTGCTGAACTGC
GAAATAGACAACTACATCACGGAAAACAGAGGTACCTTTTACATAGACGA
CTCGTTCAGCTTCTCTCGCGTTCTCCTCTTGGGTAACCATTTGCACATCT
TTGTCCTGGAACTCCTCTTGGTGCTGTCGATCTTCTTGATGACCTCTAAT
TTGTTAATTGCAGCTGCTGGCGCTTGTGCCCTAAACATATTACTACGCCA
AGTGTTCCGCCATTGGGTGCGAAGGAACATCTCCCGCAAGACCCTCATCG
ACGAGAGGTTCCTCTTGTAGAAGCTTTCTAGACCATTCT
BS23320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15923-RC | 2955 | CG15923-PC | 1..2904 | 17..2920 | 14505 | 100 | Plus |
| CG15923-RB | 2904 | CG15923-PB | 1..2904 | 17..2920 | 14505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15923-RC | 4319 | CG15923-RC | 58..2961 | 17..2920 | 14505 | 100 | Plus |
| CG15923-RB | 4319 | CG15923-RB | 58..2961 | 17..2920 | 14505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20613547..20614728 | 2418..1237 | 5895 | 99.9 | Minus |
| 3R | 32079331 | 3R | 20614793..20615751 | 1240..282 | 4795 | 100 | Minus |
| 3R | 32079331 | 3R | 20616580..20616844 | 281..17 | 1325 | 100 | Minus |
| 3R | 32079331 | 3R | 20613319..20613488 | 2588..2419 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 20612746..20612909 | 2839..2676 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 20612966..20613053 | 2675..2588 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 20612609..20612689 | 2920..2840 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:14:21 has no hits.
BS23320.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:03 Download gff for
BS23320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15923-RB | 54..2957 | 17..2923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:48 Download gff for
BS23320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15923-RB | 58..2961 | 17..2923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:37 Download gff for
BS23320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15923-RB | 58..2961 | 17..2923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:37 Download gff for
BS23320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20612746..20612909 | 2676..2839 | 100 | <- | Minus |
| 3R | 20612966..20613053 | 2588..2675 | 100 | <- | Minus |
| 3R | 20613320..20613488 | 2419..2587 | 100 | <- | Minus |
| 3R | 20612606..20612689 | 2840..2923 | 96 | <- | Minus |
| 3R | 20613547..20614724 | 1241..2418 | 99 | <- | Minus |
| 3R | 20614793..20615751 | 282..1240 | 100 | <- | Minus |
| 3R | 20616580..20616844 | 17..281 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:48 Download gff for
BS23320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16438328..16438411 | 2840..2923 | 96 | <- | Minus |
| arm_3R | 16438468..16438631 | 2676..2839 | 100 | <- | Minus |
| arm_3R | 16438688..16438775 | 2588..2675 | 100 | <- | Minus |
| arm_3R | 16439042..16439210 | 2419..2587 | 100 | <- | Minus |
| arm_3R | 16439269..16440446 | 1241..2418 | 99 | <- | Minus |
| arm_3R | 16440515..16441473 | 282..1240 | 100 | <- | Minus |
| arm_3R | 16442302..16442566 | 17..281 | 100 | | Minus |
BS23320.pep Sequence
Translation from 16 to 2919
> BS23320.pep
MRMRMRCFSRAINWCCALFWIALQIPVPICSLTTAATNPSQLPTPHTFRF
QNPTQCLKNEFYNLNLFDCVPCNEVAGGDGVQGKLQPDKFTCKCPAGHLS
IYERGKTWPTCDEICTPDRSDNCTSVWLPQPRPTNQCSYRYLNSTAAFAS
QLPVHPLISGIILTHTNPMSRAGDCHSCDMTHNFRYQDFCLASTLLRPYV
HYNAFWQATTTPDSSAPSRFGELKFVAFFCLTLRNDTACQQLANLCVLSH
FSLEKHSPCSAFLLTQVSDVVMKYAHSGEQVRSLQPFLFYKKGRATKELL
SKTLQLPDRKELRLFSTTFGLDGGLKRWGAFHPEMLNMCQQKAPSLRVAL
PKRESEVSCQLTLERLIDLANQRHNAEFLTVFLNFSSNWQYLLHQLPVLI
ETLTPENQRPQQEEWQLVKRFQLISASPRDSHLHQTMPRYEDAHKLQQYY
SLRYVEDIEIRYTLDKDQPDRVGLPLIRLRYRHIEMGSGNISLSQLYPFT
LRISYDQVKRGWDWLILEVALPLLLLLAFAAAVFRLQNLRRRRKADLCQM
SSLMEFLLQLAGNVAYALLATTLLLLLLQASNSRLLKILLNTAFVLQFLF
LGIHLWRSSQLELFLIDWERPRSSCEGQRLNLDSSSLCSSVRTFVAESSV
SAWRVLFTANAWIRLSVTQKYSTLGQVFVVIAGYQFLERFTKGDIFLRCC
LIAAAYLLTYLLQIIGHQLFIANPLQKFIDLCSLANISLFSLTEPGFGYY
IHGRSPHGFADTDMSSMILQLQRTQTMCGRRGLLMDSDKQAYVILPPRNL
HIYLERLLLPFQRSLTGTLSQTMLYQKDIVPSIDGQMERTSIAYASVNRF
FCAFIDHAIKDMDYIIKEKSFVEQLLNCEIDNYITENRGTFYIDDSFSFS
RVLLLGNHLHIFVLELLLVLSIFLMTSNLLIAAAGACALNILLRQVFRHW
VRRNISRKTLIDERFLL*
BS23320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15923-PC | 984 | CG15923-PC | 1..967 | 1..967 | 5078 | 100 | Plus |
| CG15923-PB | 967 | CG15923-PB | 1..967 | 1..967 | 5078 | 100 | Plus |
