BS23327.complete Sequence
977 bp assembled on 2011-01-25
GenBank Submission: KX803952
> BS23327.complete
GAAGTTATCAGTCGACATGAATCTGTTAGACTTGCCACAAACACTAATTC
AGGACATTTTGGAGTTGCTCCCCTACGACGAGGTGGCAAAAAAACGAGAG
GTGTGCACTCTATTTAATTATCTTGGGCAGCAAATATTAAACAAGGGTTT
TAACAAGATCATTATGGCCCATGCCAAGAACTTCAAGCGCATCAAATCCA
TGCTGCCACGACGGGAATCGGAACGCAGGAACCACATTCTATCCCGCCAC
TCGGACATACTTACCTCGATCGAAACACGGATCTCGATGCTGACCATGAC
GTACTCCAAGTTTATTGACCTCAACATCTGCTGTTTCATACCTGGTCGCG
TTCTGGACGAGATCAACAGCATCCTGCGCATTTTGAGCACCTCCACTAAA
CAGCTGCGACCACATGAAGTGCTGCAGGAGCTGCGCGACATCTCCTCCAT
GGCCATTGAGCATTTCGACGAAAAGATTGCTGTGAATTTCAAATTGGAAC
ACCGAAAACAATTGGCGGAATCCACGGCGGCCGGAGCTCGACTTGTGGTT
TGCAGTGCCTTGGGCGACATAAGCTTTAGTGGCGTAAGGCGAACCGGAAT
CAGTCGTCCCGTAGATCATGGGCTCGTCCAGCAGGCTATCGTTCAGTTGG
CCCCCATATCTGCCAGCAAATCACACTCTGATTCCTCTCAAAAGGATCGC
ATGTCTAAACAACTGTTCAAGCAATACCAGCTCCAAAGGTCACTTTCGCA
AAAGATTCGCCTCTTGGAAGTGTCGCGCAAGGTGCAGGATCGCCGATTGC
AGGAAGCCCTATCCAGCATCACCGAACTGACCACCCAAGTGTCCGAACTT
AAGCGCCAAATGGAGGATGTGGTGGCCAATATGCCCAGTTGCGCTGTTAA
ACGTCAGGCTGTCGCCAGCGCGGACTGCTTACCACCGGCCCTGAAAAAAC
CCAAGGTGTAGAAGCTTTCTAGACCAT
BS23327.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pall-RA | 945 | CG3428-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pall-RA | 1206 | CG3428-RA | 87..1031 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9486623..9487358 | 961..226 | 3680 | 100 | Minus |
| 3L | 28110227 | 3L | 9487424..9487554 | 229..99 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 9487618..9487704 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:31:11 has no hits.
BS23327.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:45 Download gff for
BS23327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 64..1008 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:54 Download gff for
BS23327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 87..1031 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:14 Download gff for
BS23327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 87..1031 | 17..961 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:14 Download gff for
BS23327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9486623..9487355 | 229..961 | 100 | <- | Minus |
| 3L | 9487425..9487552 | 101..228 | 100 | <- | Minus |
| 3L | 9487621..9487704 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:54 Download gff for
BS23327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9479723..9480455 | 229..961 | 100 | <- | Minus |
| arm_3L | 9480525..9480652 | 101..228 | 100 | <- | Minus |
| arm_3L | 9480721..9480804 | 17..100 | 100 | | Minus |
BS23327.pep Sequence
Translation from 16 to 960
> BS23327.pep
MNLLDLPQTLIQDILELLPYDEVAKKREVCTLFNYLGQQILNKGFNKIIM
AHAKNFKRIKSMLPRRESERRNHILSRHSDILTSIETRISMLTMTYSKFI
DLNICCFIPGRVLDEINSILRILSTSTKQLRPHEVLQELRDISSMAIEHF
DEKIAVNFKLEHRKQLAESTAAGARLVVCSALGDISFSGVRRTGISRPVD
HGLVQQAIVQLAPISASKSHSDSSQKDRMSKQLFKQYQLQRSLSQKIRLL
EVSRKVQDRRLQEALSSITELTTQVSELKRQMEDVVANMPSCAVKRQAVA
SADCLPPALKKPKV*
BS23327.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pall-PA | 314 | CG3428-PA | 1..314 | 1..314 | 1556 | 100 | Plus |
| dmpd-PB | 603 | CG11866-PB | 121..382 | 2..284 | 305 | 30.2 | Plus |
| dmpd-PA | 603 | CG11866-PA | 121..382 | 2..284 | 305 | 30.2 | Plus |
