BS23328.complete Sequence
1760 bp assembled on 2011-02-18
GenBank Submission: KX801027
> BS23328.complete
GAAGTTATCAGTCGACATGGCACCACACGATCGCGACTTTGGTCACAGTG
GACGTGGCGGTCGCGGAGGCGATCGAGGCGGCGATGATCGGCGAGGAGGC
GGCGGCGGAGGCAATCGCTTCGGTGGCGGCGGTGGCGGTGGCGATTACCA
CGGCATAAGGAATGGACGCGTCGAGAAGCGACGCGATGACCGCGGAGGCG
GCAACCGATTTGGAGGTGGTGGTGGATTCGGGGATCGCCGAGGAGGAGGT
GGCGGCGGCAGCCAAGACCTCCCCATGCGTCCGGTCGACTTCTCCAACCT
GGCTCCCTTCAAGAAGAACTTTTACCAGGAGCACCCTAACGTAGCAAACC
GATCGCCCTACGAAGTTCAGAGGTATCGCGAAGAGCAGGAGATCACCGTG
CGCGGACAGGTGCCGAACCCCATCCAGGACTTCTCCGAGGTCCATCTGCC
CGACTACGTCATGAAGGAGATCCGCCGACAGGGCTACAAGGCCCCCACCG
CTATCCAAGCGCAGGGCTGGCCTATCGCCATGAGTGGCTCGAACTTCGTC
GGCATTGCCAAGACGGGATCCGGAAAGACCCTGGGCTACATCCTGCCCGC
TATTGTCCACATCAACAACCAGCAGCCGCTGCAGAGGGGCGACGGACCTA
TCGCCCTCGTGCTGGCCCCCACTCGGGAGCTGGCCCAACAGATCCAGCAG
GTGGCCACCGAATTCGGTTCCTCGTCGTATGTTCGCAACACCTGCGTCTT
CGGCGGCGCCCCGAAGGGCGGCCAAATGCGGGATCTGCAGCGCGGCTGCG
AGATCGTCATTGCCACACCCGGACGTCTTATTGATTTCCTCTCCGCCGGC
TCTACTAACCTGAAGCGTTGCACCTACTTGGTGCTGGACGAGGCCGATCG
CATGTTAGACATGGGCTTCGAGCCCCAGATCAGAAAGATCGTCTCACAGA
TCCGGCCCGACCGACAGACGCTCATGTGGAGCGCTACCTGGCCCAAGGAG
GTCAAGCAGCTTGCCGAGGACTTTTTGGGCAACTACATCCAGATCAACAT
TGGATCGCTGGAGCTGTCCGCCAATCACAACATCCGCCAGGTGGTGGACG
TTTGTGACGAGTTCAGCAAGGAGGAGAAATTGAAGACCCTCCTGTCAGAC
ATCTACGACACCAGCGAGAGCCCCGGCAAGATTATCATATTCGTGGAGAC
AAAGCGACGCGTGGACAACCTGGTGCGCTTCATCCGCAGCTTCGGAGTCC
GTTGTGGAGCTATTCACGGTGACAAGTCGCAATCAGAACGAGACTTTGTG
CTCCGTGAGTTCCGCTCGGGCAAGTCCAACATTCTGGTGGCCACCGATGT
GGCGGCCCGTGGACTAGACGTGGACGGCATCAAGTATGTCATCAACTTTG
ACTACCCGCAAAACAGCGAGGACTACATCCATCGCATCGGTCGCACAGGA
CGATCCAACACAAAGGGCACCTCTTTCGCCTTCTTCACCAAGAACAATGC
CAAGCAAGCCAAGGCGCTGGTCGACGTACTCCGAGAAGCTAATCAGGAAA
TCAATCCTGCCCTGGAAAATCTGGCCCGCAACTCGCGCTACGACGGTGGC
GGCGGACGCTCCCGTTATGGAGGCGGTGGCGGCGGCGGTCGCTTCGGCGG
CGGCGGCTTCAAGAAGGGCAGCCTGAGCAACGGACGAGGCTTCGGAGGAG
GCGGCGGCGGCGGCGGCGAAGGCAGACACTCGCGCTTCGACTAGAAGCTT
TCTAGACCAT
BS23328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RH | 1728 | CG10279-PH | 1..1728 | 17..1744 | 8640 | 100 | Plus |
| Rm62-RF | 1737 | CG10279-PF | 10..1737 | 17..1744 | 8640 | 100 | Plus |
| Rm62-RA | 2160 | CG10279-PA | 433..2160 | 17..1744 | 8640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RH | 2760 | CG10279-RH | 301..2029 | 17..1745 | 8645 | 100 | Plus |
| Rm62-RF | 2833 | CG10279-RF | 374..2102 | 17..1745 | 8645 | 100 | Plus |
| Rm62-RA | 2995 | CG10279-RA | 536..2264 | 17..1745 | 8645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6004017..6005126 | 1128..19 | 5550 | 100 | Minus |
| 3R | 32079331 | 3R | 6003673..6003911 | 1367..1129 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 6001162..6001365 | 1745..1542 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 6001557..6001739 | 1547..1365 | 915 | 100 | Minus |
| X | 23542271 | X | 7928923..7929222 | 1090..791 | 420 | 76 | Minus |
| X | 23542271 | X | 7929323..7929525 | 696..494 | 295 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:28:38 has no hits.
BS23328.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:06 Download gff for
BS23328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RB | 628..2355 | 17..1744 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:39 Download gff for
BS23328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 536..2263 | 17..1744 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:52 Download gff for
BS23328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RA | 536..2263 | 17..1744 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:52 Download gff for
BS23328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6001558..6001736 | 1368..1546 | 100 | <- | Minus |
| 3R | 6003673..6003911 | 1129..1367 | 100 | <- | Minus |
| 3R | 6001163..6001360 | 1547..1744 | 100 | <- | Minus |
| 3R | 6004017..6005128 | 17..1128 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:39 Download gff for
BS23328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1826885..1827082 | 1547..1744 | 100 | <- | Minus |
| arm_3R | 1827280..1827458 | 1368..1546 | 100 | <- | Minus |
| arm_3R | 1829395..1829633 | 1129..1367 | 100 | <- | Minus |
| arm_3R | 1829739..1830850 | 17..1128 | 99 | | Minus |
BS23328.pep Sequence
Translation from 16 to 1743
> BS23328.pep
MAPHDRDFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNG
RVEKRRDDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAPFKK
NFYQEHPNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDYVMK
EIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHIN
NQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPK
GGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMG
FEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLEL
SANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVD
NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGL
DVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA
LVDVLREANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGGFKK
GSLSNGRGFGGGGGGGGEGRHSRFD*
BS23328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-PH | 575 | CG10279-PH | 1..575 | 1..575 | 3046 | 100 | Plus |
| Rm62-PF | 578 | CG10279-PF | 4..578 | 1..575 | 3046 | 100 | Plus |
| Rm62-PA | 719 | CG10279-PA | 145..719 | 1..575 | 3046 | 100 | Plus |
| Rm62-PB | 578 | CG10279-PB | 4..578 | 1..575 | 3046 | 100 | Plus |
| Rm62-PD | 575 | CG10279-PD | 1..575 | 1..575 | 3046 | 100 | Plus |
