BS23332.complete Sequence
2177 bp assembled on 2011-02-18
GenBank Submission: KX804283
> BS23332.complete
GAAGTTATCAGTCGACATGTGCACCGCTGGCGTGGTTGATGGTGGTGCTG
GGGCCACTACAGGTGGTGCTGATGCGGCTGATAATAGTGGAGCTGCGCCC
GCCCCAAGTTCGACGGCCTTGAACCCCCCACAGGTCTCCATTTCCATGAA
CGAACCGGAAAACCTGAAACCACCTGCCAAATCCAACTTCCGCCGTTATC
TTCAGTGGATCCTAGCACCTGTCCTGACCGCCATTTCCGGTCTGATCCTC
TACTACCAAGGGCCTTGGTATGGAGTGGCCACGCTATATGCCGCATTGAT
ATCCATACTGCTGGTGCGTCCAGGATGGCGCTGGTTCTACATTGCAGCTG
TTACCACACCCAGGGATACTGTAGCCCTCTTTGCCTACATCCGTGTGCTG
CTCTTCATTAAGCGCCAGGAGCGCAAGAACCTGAACATCGGAGACATCTT
TGAGTCAAATGTGGCCCGGCAGCCGGATAAACTGGCCATTGTCAGTGAGT
CCCAGCAGTGGACCTTCCGCCAGGTGAACGAGCATTCGAACCGGGTGGCC
AACGTGTTCCACAGTCACGGCTACAAAAAGGGCGACGTGGTGGGTCTGCT
GCTCGAGAATCGCGCCGAATTTGTAGCCACCTGGCTTGGTCTCTCCAAGA
TCGGCGTGATCACGCCGCTGATTAACACAAACCTCCGTGGAGCCTCACTG
CAGCACAGCATTACCGTGGGCCAGTGCACGGCGCTCATTTACGGCGCCAG
TTTCCGGTCGGCCGTGATGGATATCGCCAAGGATCTGCCCGCCCACGTCG
GACTGTATCAGTTCAACGACGAGTCCAACCAGGAGGTGGTGGCTTCCGAG
GGCCTTAGCCAGGGACTGGCCCAGCAGTTGAACGGCCTTCTGGAGACGGC
GGCCAAGGATAAGGTGGCCGCCGGCGCTTCTCGGGCGGATCATCACGACA
AGTTGGTCTACATCTACACGTCGGGCACCACGGGCTTGCCCAAGGCAGCC
GTCATCACGCATTCTCGGTACTTTTTCATAGCTGCCGGCATTCACTACAC
GCTTGGCTTCAAGGATCAGGATGTGTTCTATACTCCCTTGCCCCTATATC
ACACCGCTGGCGGAGTGATGAGCATGGGCCAGGCCTTACTCTTCGGCTCC
ACCGTGGTCATAAGGAAGAAATTCAGCGCCTCCGGTTACTTTTCAGACTG
CGCCCGCTTCCAATGCACGGTGGGACAGTACATTGGGGAGATGGCGCGCT
ACATCCTGGCCACGCCATCGGCTCCTCACGATCGGAACCACCAAGTGCGA
ATGGTGTTCGGAAATGGACTGCGTCCACAGATTTGGCCGCAGTTCGTGGA
GCGCTTCGGGATTCGAAAAGTGGGCGAGTTCTACGGAGCCACTGAGGGCA
ATGCCAACATCATGAACAATGACAGCACAGTGGGCGCCATTGGATTCATA
TCCCGCATACTGCCGCAGATCTACCCAATATCGATCATAAAAGCAGATCC
ACATACGGGAGAGCCTTTGAGGAACAGCCAAGGACTGTGTGAGAGATGCG
AGGCGGATGAGCCAGGCGTCTTCGTTGGAAAGATTGTGCGGGGTAATCCC
TGCCGTGAGTTCCTCGGCTACGTTGACCAGAAGGCCTCCTCCAAGAAGGT
GGTCCACGATGTCTTCTCCAAGGGCGACATGGCCTTCATCTCGGGCGATC
TGCTGGTGGCCGATGAGCGGGGCTATCTGTACTTCAAAGATCGGACCGGC
GACACTTTCCGCTGGAAGGGTGAGAATGTCTCCACCAGCGAGGTGGAGGC
GCAGTTGAGTAATCTGGCTGGCTACAAGGATGTGATTGTGTACGGCGTAA
GCATACCCAACACTGAGGGCAGAGCAGGAATGGCAGCCATCTACGATCCC
ACTCGGGAGGTCAACGTCAGCCAGCTGGGCGTGGAACTGGCCAAATCCCT
GCCCAACTACGCCAGGCCGCAGTTTCTCAGATTCCTGCGCAAAATCGACC
TGACGGGCACCTTCAAGTTGCGCAAGGTGGAGCTTCAGCAGCAGGGCTTC
AATCCGGAGATCATCGACGATGAACTCTTCTACGCCCAACCGGATGGCGT
GTATGCTCCACTCACCCCATCCGTATACGAGAGGATAGTTAGAAACGAGC
TGCGATTCTAGAAGCTTTCTAGACCAT
BS23332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44252-RD | 2145 | CG44252-PD | 1..2145 | 17..2161 | 10725 | 100 | Plus |
| CG44252-RE | 2145 | CG44252-PE | 1..2145 | 17..2161 | 10725 | 100 | Plus |
| CG44252-RB | 2112 | CG44252-PB | 83..2112 | 132..2161 | 10150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44252-RD | 2651 | CG44252-RD | 205..2363 | 7..2165 | 10735 | 99.8 | Plus |
| CG44252-RE | 2745 | CG44252-RE | 299..2457 | 7..2165 | 10735 | 99.8 | Plus |
| CG44252-RB | 2538 | CG44252-RB | 217..2250 | 132..2165 | 10155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23060315..23061261 | 1219..2165 | 4720 | 99.9 | Plus |
| 2R | 25286936 | 2R | 23059352..23059999 | 373..1020 | 3240 | 100 | Plus |
| 2R | 25286936 | 2R | 23059053..23059293 | 132..372 | 1205 | 100 | Plus |
| 2R | 25286936 | 2R | 23060055..23060259 | 1017..1221 | 1025 | 100 | Plus |
| 2L | 23513712 | 2L | 10511929..10512602 | 1899..1226 | 955 | 76.1 | Minus |
| 2L | 23513712 | 2L | 10513191..10513446 | 746..491 | 620 | 82.8 | Minus |
| 2R | 25286936 | 2R | 23057507..23057635 | 7..135 | 600 | 97.7 | Plus |
| 2L | 23513712 | 2L | 10512933..10513008 | 1019..944 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:30:56 has no hits.
BS23332.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:08 Download gff for
BS23332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30194-RD | 193..2337 | 17..2161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:00 Download gff for
BS23332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44252-RE | 309..2453 | 17..2161 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:50 Download gff for
BS23332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44252-RE | 309..2453 | 17..2161 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:50 Download gff for
BS23332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23057517..23057633 | 17..133 | 100 | -> | Plus |
| 2R | 23059055..23059293 | 134..372 | 100 | -> | Plus |
| 2R | 23059352..23059996 | 373..1017 | 100 | -> | Plus |
| 2R | 23060056..23060257 | 1018..1219 | 100 | -> | Plus |
| 2R | 23060316..23061257 | 1220..2161 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:00 Download gff for
BS23332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18947839..18948780 | 1220..2161 | 100 | | Plus |
| arm_2R | 18945040..18945156 | 17..133 | 100 | -> | Plus |
| arm_2R | 18946578..18946816 | 134..372 | 100 | -> | Plus |
| arm_2R | 18946875..18947519 | 373..1017 | 100 | -> | Plus |
| arm_2R | 18947579..18947780 | 1018..1219 | 100 | -> | Plus |
BS23332.pep Sequence
Translation from 16 to 2160
> BS23332.pep
MCTAGVVDGGAGATTGGADAADNSGAAPAPSSTALNPPQVSISMNEPENL
KPPAKSNFRRYLQWILAPVLTAISGLILYYQGPWYGVATLYAALISILLV
RPGWRWFYIAAVTTPRDTVALFAYIRVLLFIKRQERKNLNIGDIFESNVA
RQPDKLAIVSESQQWTFRQVNEHSNRVANVFHSHGYKKGDVVGLLLENRA
EFVATWLGLSKIGVITPLINTNLRGASLQHSITVGQCTALIYGASFRSAV
MDIAKDLPAHVGLYQFNDESNQEVVASEGLSQGLAQQLNGLLETAAKDKV
AAGASRADHHDKLVYIYTSGTTGLPKAAVITHSRYFFIAAGIHYTLGFKD
QDVFYTPLPLYHTAGGVMSMGQALLFGSTVVIRKKFSASGYFSDCARFQC
TVGQYIGEMARYILATPSAPHDRNHQVRMVFGNGLRPQIWPQFVERFGIR
KVGEFYGATEGNANIMNNDSTVGAIGFISRILPQIYPISIIKADPHTGEP
LRNSQGLCERCEADEPGVFVGKIVRGNPCREFLGYVDQKASSKKVVHDVF
SKGDMAFISGDLLVADERGYLYFKDRTGDTFRWKGENVSTSEVEAQLSNL
AGYKDVIVYGVSIPNTEGRAGMAAIYDPTREVNVSQLGVELAKSLPNYAR
PQFLRFLRKIDLTGTFKLRKVELQQQGFNPEIIDDELFYAQPDGVYAPLT
PSVYERIVRNELRF*
BS23332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44252-PD | 714 | CG44252-PD | 1..714 | 1..714 | 3710 | 100 | Plus |
| CG44252-PE | 714 | CG44252-PE | 1..714 | 1..714 | 3710 | 100 | Plus |
| CG44252-PB | 703 | CG44252-PB | 28..703 | 39..714 | 3508 | 99.9 | Plus |
| Fatp-PE | 626 | CG7400-PE | 4..626 | 87..714 | 2345 | 69.3 | Plus |
| Fatp-PD | 668 | CG7400-PD | 46..668 | 87..714 | 2345 | 69.3 | Plus |
