BS23334.complete Sequence
2519 bp assembled on 2011-02-18
GenBank Submission: KX803439
> BS23334.complete
GAAGTTATCAGTCGACATGGTCGGTTCTCAAGAAAAAAAAAACAATCATA
TCGAATTATCTGAAACACCCGCAACAGACAAAAATAATTTAAACACAACT
CATCTGGAAAACACACAACTCTCAAAAGCACTTTCACCTCCTACATCACT
ACCTCAGATACAAATTCAGATGATTAACCAAAATTTAACACATACTGGTA
TCGCTCAAAATAATACTGAAAAAGCCAACCGTCATCAATACCGGGACAGT
GGATTACAATATTTAACCCGATGCTTTGAACCATTGGCAATGCTCAATGA
TAGTAAAGAAGACTTTCCCACGCAGCCATCAAATAATATTGCCAATTACC
CTGGAGATATTCAAATTTTACCCATTTTCGATTGCTGCGAAATTTCAGAG
TCTATTCAAGCAATATCGTTGCCTAATGTAACATCTCCATCAAAGACAAA
AGATGTTCCTGGGTTGTTTTTGCGTACGATTTCGGAAAATTCGAAATCAA
AGTCGGAACCCGAATGTGAATCGCTAATTTCAGTCAAAGAATCTTCTGTA
ATGGAAAACCACACCTTTTTATTTCACGAACAAATTATTATGTCTGGCCA
ACAAAAATGTGAATTACACGAGAAACCGAAGGTTCTGGTAGTTTCCCCAC
AACAAGTAATGATTTTATATATGAATAAACTAACTCCATACGAGCGAACA
GAAATACTAACTTATCCGCAGATATATTTTATTGGCGCCAACGCTAAGAA
GCGCCCAGGAGTCTATGGCCCAAATAATTCTGAATACGACAATGAACAAG
GCGCTTACATTCATGTACCGCATGATCACGTAGCATATCGGTATGAAATG
CTAAAGATAATCGGAAAAGGTAGCTTTGGACAGGTCATTAAAGCGTATGA
TCATAAAACTCACGAACATGTTGCCTTAAAAATAGTGCGCAATGAAAAGC
GGTTTCACCGCCAGGCCCAAGAGGAAATTCGCATTCTTCATCATTTACGC
CGTCACGATAAATATAATACTATGAACATCATACACATGTTTGATTACTT
TACTTTCCGCAATCATACATGCATTACATTTGAGCTGCTCAGCATAAATC
TTTACGAATTAATTAAGAAAAATGGATTTAAAGGCTTCAGTTTGCAGCTG
GTGCGAAAGTTTGCACACTCTTTGCTACAATGTTTGGATGCACTATATAA
AAATGATATTATTCATTGCGATATGAAACCAGAAAATGTGCTACTCAAGC
AACAAGGACGTTCTGGTATAAAGGTAATTGACTTTGGGTCGTCATGCTTC
GAGAACCAGCGTATATACACATATATCCAGTCTCGTTTTTATCGCGCTCC
AGAGGTAATTTTGGGGGGAAAATATGGCAGAGCTATCGACATGTGGTCGT
TGGGTTGTATTTTAGCAGAGCTGCTTTCAGGCCATGCATTGTTTCCTGGT
GAAAACGAAAGCGATCAGTTGGCTTGCATCATTGAAGTTTTAGGAATGCC
CAATAAAAATATACTAGCCAGCTCGAAGAGGTCAAAATCGTTTTTCAGTC
CAAAGGGGTATCCTCGATATTGTACGGTTCGAACGATGTCTGATGGAATG
GTGGTCCTAATCGGCGGGCAGTCACGTCGTGGAAAACAAAGGGGCCCGCC
ATGCTCAAAAAGTCTATCTAAGGCGCTGGATGGATGCAAAGATCCACTCT
TTCTTAATTTTATACGTGGTTGCCTTGAATGGGATGCAGACAAGCGATTA
ACACCTTCCGAGGCTTTAAAACATCCATGGCTTCGCCGTCGCTTACCGAG
ACCACCAAGTAGCTCAAGTGGCTGTGGTGGGGTGAGTGGATTATGTTCTA
GTAGGAACGAATCCCCAGTTACAGGGCAGAATAGGAACTTCGCAGCAGAG
ACAACTGCATCATCGACGTCTGCTACATCTATATCTTTAACGATTAAAAG
GGAAAATAGCCATTCCAGTCTTCGTCTTCACCATGGTGCTGTTCCAGAAA
CGGACTTCAAACTTATAAAATCCGTTCCAGAGGGATCATCAACCGCAACA
AAAGAACCTATGATGAACAGTGACATTCTTCCAGAAAGTTTTAGACAAAC
AACTGTTGTATCACCATCAAAACATTCTGCTGACTCCGGCGGAATGAGTT
GTCTTAGCGCTGTGGATGTCGGGCCATCGAGATATTATCCGTATATGAAT
AACAATGAAAATAACAGGTTATTCTCGAGCTCGTTAAACAGTTCGGCCAA
CTCATTGTCACATTTGGAGCAAGCCACAAAATTAGATGCTTTGGGAGAAT
ACTCGGCGTCAACTACACCAAATTTACTATCAAAAAATACTGGCTACTCG
TTTAACTCAGGTTCTATTAACATCGATGTTGCACAAGAGTCTTTGGTTAA
TATAGCTAGTAATTACGCATTGGATAAATCTATCGACATTATTGGAAAAT
CAAATGTGTCTCTTCATACGAATAAATTAAAAGTACAATCGAAGGATATG
TAGAAGCTTTCTAGACCAT
BS23334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyrk3-RE | 2487 | CG40478-PE | 1..2487 | 17..2503 | 12420 | 100 | Plus |
| Dyrk3-RC | 2487 | CG40478-PC | 1..2487 | 17..2503 | 12420 | 100 | Plus |
| Dyrk3-RA | 2487 | CG40478-PA | 1..2487 | 17..2503 | 12420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyrk3-RE | 4032 | CG40478-RE | 477..2963 | 17..2503 | 12420 | 100 | Plus |
| Dyrk3-RC | 3320 | CG40478-RC | 413..2899 | 17..2503 | 12420 | 100 | Plus |
| Dyrk3-RA | 3384 | CG40478-RA | 477..2963 | 17..2503 | 12420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1228649..1229517 | 1277..409 | 4345 | 100 | Minus |
| 4 | 1348131 | 4 | 1226898..1227504 | 1875..1269 | 3020 | 99.8 | Minus |
| 4 | 1348131 | 4 | 1229580..1229973 | 410..17 | 1970 | 100 | Minus |
| 4 | 1348131 | 4 | 1226504..1226852 | 2217..1869 | 1745 | 100 | Minus |
| 4 | 1348131 | 4 | 1226158..1226444 | 2503..2217 | 1435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:17:08 has no hits.
BS23334.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:04 Download gff for
BS23334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyrk3-RC | 407..2893 | 17..2503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:10 Download gff for
BS23334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyrk3-RA | 477..2963 | 17..2503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:48 Download gff for
BS23334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyrk3-RA | 477..2963 | 17..2503 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:48 Download gff for
BS23334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1226158..1226444 | 2217..2503 | 100 | <- | Minus |
| 4 | 1226505..1226846 | 1875..2216 | 100 | <- | Minus |
| 4 | 1226899..1227499 | 1274..1874 | 99 | <- | Minus |
| 4 | 1228653..1229515 | 411..1273 | 100 | <- | Minus |
| 4 | 1229580..1229973 | 17..410 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:10 Download gff for
BS23334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1230231..1230572 | 1875..2216 | 100 | <- | Minus |
| arm_4 | 1229884..1230170 | 2217..2503 | 100 | <- | Minus |
| arm_4 | 1230625..1231225 | 1274..1874 | 99 | <- | Minus |
| arm_4 | 1232379..1233241 | 411..1273 | 100 | <- | Minus |
| arm_4 | 1233306..1233699 | 17..410 | 100 | | Minus |
BS23334.pep Sequence
Translation from 16 to 2502
> BS23334.pep
MVGSQEKKNNHIELSETPATDKNNLNTTHLENTQLSKALSPPTSLPQIQI
QMINQNLTHTGIAQNNTEKANRHQYRDSGLQYLTRCFEPLAMLNDSKEDF
PTQPSNNIANYPGDIQILPIFDCCEISESIQAISLPNVTSPSKTKDVPGL
FLRTISENSKSKSEPECESLISVKESSVMENHTFLFHEQIIMSGQQKCEL
HEKPKVLVVSPQQVMILYMNKLTPYERTEILTYPQIYFIGANAKKRPGVY
GPNNSEYDNEQGAYIHVPHDHVAYRYEMLKIIGKGSFGQVIKAYDHKTHE
HVALKIVRNEKRFHRQAQEEIRILHHLRRHDKYNTMNIIHMFDYFTFRNH
TCITFELLSINLYELIKKNGFKGFSLQLVRKFAHSLLQCLDALYKNDIIH
CDMKPENVLLKQQGRSGIKVIDFGSSCFENQRIYTYIQSRFYRAPEVILG
GKYGRAIDMWSLGCILAELLSGHALFPGENESDQLACIIEVLGMPNKNIL
ASSKRSKSFFSPKGYPRYCTVRTMSDGMVVLIGGQSRRGKQRGPPCSKSL
SKALDGCKDPLFLNFIRGCLEWDADKRLTPSEALKHPWLRRRLPRPPSSS
SGCGGVSGLCSSRNESPVTGQNRNFAAETTASSTSATSISLTIKRENSHS
SLRLHHGAVPETDFKLIKSVPEGSSTATKEPMMNSDILPESFRQTTVVSP
SKHSADSGGMSCLSAVDVGPSRYYPYMNNNENNRLFSSSLNSSANSLSHL
EQATKLDALGEYSASTTPNLLSKNTGYSFNSGSINIDVAQESLVNIASNY
ALDKSIDIIGKSNVSLHTNKLKVQSKDM*
BS23334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyrk3-PE | 828 | CG40478-PE | 1..828 | 1..828 | 4325 | 100 | Plus |
| Dyrk3-PC | 828 | CG40478-PC | 1..828 | 1..828 | 4325 | 100 | Plus |
| Dyrk3-PA | 828 | CG40478-PA | 1..828 | 1..828 | 4325 | 100 | Plus |
| Dyrk2-PE | 722 | CG4551-PE | 118..586 | 193..669 | 1062 | 47.3 | Plus |
| Dyrk2-PD | 722 | CG4551-PD | 118..586 | 193..669 | 1062 | 47.3 | Plus |
