BS23338.complete Sequence
1385 bp assembled on 2011-01-25
GenBank Submission: KX805019
> BS23338.complete
GAAGTTATCAGTCGACATGCGGCTAATTGGATTTATTCTGAATTTGGCAG
CCCTAACAGCTGTCGCCTGGGCCAACCACCATGAGAGCCTTTCCCTCAGT
CCGGCGGAGCACAGCGTGGTGCGGTACACAAACGAATCCCTCATCGTCCA
GTGCCGCAGTCCCGATCCCAAAGTGGAGCTCCATTGGAAATCGCCGAAAG
GCGAAATTATACGCGAGCACAAAGGACGCATTCACATTGAGCAAACATCG
ACAGAACAATTGAAAATCGTTTTCGCCCACATCGCACTGGCCGACAAGGG
CAATTGGAGCTGCGAAGCTGCTGATGGAAGTCTGCATAGTAAATCCTTCG
ATTTGATTGTGTACCAGAAAATTACATTCACGGAAAATGCCACCGTGATG
ACGGTCAAGGAGGGCGAGAAGGCCACCATCCTGTGCGAGGTGAAGGGCGA
GCCCCAGCCGAATGTCACCTGGCACTTCAATGGACAGCCCATCAGTGCCG
GCGCGGCCGACGACTCCAAGTTCCGCATCCTGGCCGATGGTTTGCTCATC
AACAAGGTAACACAGAATGACACCGGCGAGTACGCGTGCCGGGCATACCA
AGTCAACTCGATTGCTTCCGATATGCAGGAGCGCACCGTTTTGATGAAAA
TCGAACACAAGCCCATTTGGTCCAAGACTCCATTTGTTAGTCTAAAGTAC
GCCTACATAAACGGAACTGCGACTCTTATGTGCGAGGCACTGGCGGAACC
TCCAGCGAATTTTACATGGTATCGCAAACACAACAAGCTGCACAGCAACA
ACAGACTGTACACGATCCAGTCGGACAGCTACTGGTCGAGTCTGACCATC
CATGTGCTGAACACCAGCGCCTTCGATAACTACAGGTGTCGCGCCAGGAA
CGATCTGGGCACCATCGAGAGGACCACGCGACTGGAGCAGGGCGAGAAGC
CTCCGTCACCGGCCAACTTCCAGCTGCGTGGCTTCAATTCAAACACCTTC
GATGTGGTACTGAGTGCTCCACGAGGTCCTCCCGACAGTCCCATGGGGGT
CAATGGATTCCGCATCGAGTACATGACCGAAATGGAGTTCAAGACGGATG
CGGGCAAGTGGACCAATGCCAGGCGGAAGGATTATGCTTTCGAGGAGGGG
GCTACCTTCCTTCTGACGAACTTAGAGCCAGATACCGTTTACCTGGTGCG
GGCCGCATCACGGAATCTGGCCGGATTCAGTGACTTCACCAAGGTGGAGA
AGTACAAGACACTTTCGCTGGAGCCCCGAGTCTCTTCGGGAGTCAAGGAG
ACCAGAAATATGTGCGTGGAACTGGGTGTGATGACACTAATGGTCCTGAT
GCGGCCGTTCCTGGGATGAAAGCTTTCTAGACCAT
BS23338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15630-RA | 1353 | CG15630-PA | 1..1353 | 17..1369 | 6765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15630-RA | 2672 | CG15630-RA | 365..1718 | 17..1370 | 6770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4735848..4736340 | 1149..657 | 2465 | 100 | Minus |
| 2L | 23513712 | 2L | 4735546..4735768 | 1370..1148 | 1115 | 100 | Minus |
| 2L | 23513712 | 2L | 4738260..4738457 | 254..57 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 4737059..4737212 | 656..503 | 770 | 100 | Minus |
| 2L | 23513712 | 2L | 4737363..4737500 | 503..366 | 690 | 100 | Minus |
| 2L | 23513712 | 2L | 4737603..4737716 | 365..252 | 570 | 100 | Minus |
| 2L | 23513712 | 2L | 4793638..4793680 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:31:40 has no hits.
BS23338.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:49 Download gff for
BS23338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15630-RA | 361..1712 | 17..1368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:07 Download gff for
BS23338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15630-RA | 365..1716 | 17..1368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:23 Download gff for
BS23338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15630-RA | 365..1716 | 17..1368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:23 Download gff for
BS23338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4793638..4793680 | 17..59 | 100 | | Minus |
| 2L | 4735548..4735767 | 1149..1368 | 100 | <- | Minus |
| 2L | 4735849..4736340 | 657..1148 | 100 | <- | Minus |
| 2L | 4737059..4737211 | 504..656 | 100 | <- | Minus |
| 2L | 4737363..4737500 | 366..503 | 100 | <- | Minus |
| 2L | 4737603..4737713 | 255..365 | 100 | <- | Minus |
| 2L | 4738260..4738454 | 60..254 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:07 Download gff for
BS23338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4737363..4737500 | 366..503 | 100 | <- | Minus |
| arm_2L | 4737603..4737713 | 255..365 | 100 | <- | Minus |
| arm_2L | 4738260..4738454 | 60..254 | 100 | <- | Minus |
| arm_2L | 4793638..4793680 | 17..59 | 100 | | Minus |
| arm_2L | 4737059..4737211 | 504..656 | 100 | <- | Minus |
| arm_2L | 4735548..4735767 | 1149..1368 | 100 | <- | Minus |
| arm_2L | 4735849..4736340 | 657..1148 | 100 | <- | Minus |
BS23338.pep Sequence
Translation from 16 to 1368
> BS23338.pep
MRLIGFILNLAALTAVAWANHHESLSLSPAEHSVVRYTNESLIVQCRSPD
PKVELHWKSPKGEIIREHKGRIHIEQTSTEQLKIVFAHIALADKGNWSCE
AADGSLHSKSFDLIVYQKITFTENATVMTVKEGEKATILCEVKGEPQPNV
TWHFNGQPISAGAADDSKFRILADGLLINKVTQNDTGEYACRAYQVNSIA
SDMQERTVLMKIEHKPIWSKTPFVSLKYAYINGTATLMCEALAEPPANFT
WYRKHNKLHSNNRLYTIQSDSYWSSLTIHVLNTSAFDNYRCRARNDLGTI
ERTTRLEQGEKPPSPANFQLRGFNSNTFDVVLSAPRGPPDSPMGVNGFRI
EYMTEMEFKTDAGKWTNARRKDYAFEEGATFLLTNLEPDTVYLVRAASRN
LAGFSDFTKVEKYKTLSLEPRVSSGVKETRNMCVELGVMTLMVLMRPFLG
*
BS23338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15630-PA | 450 | CG15630-PA | 1..450 | 1..450 | 2364 | 100 | Plus |
| CG33543-PD | 468 | CG33543-PD | 48..445 | 25..415 | 786 | 37.7 | Plus |
| Fas2-PB | 773 | CG3665-PB | 33..349 | 25..338 | 226 | 23.7 | Plus |
| Fas2-PC | 811 | CG3665-PC | 33..349 | 25..338 | 226 | 23.7 | Plus |
| Fas2-PH | 832 | CG3665-PH | 33..349 | 25..338 | 226 | 23.7 | Plus |
| Fas2-PB | 773 | CG3665-PB | 287..611 | 84..407 | 168 | 23.4 | Plus |
| Fas2-PC | 811 | CG3665-PC | 287..611 | 84..407 | 168 | 23.4 | Plus |
