BS23339.complete Sequence
2654 bp assembled on 2011-02-18
GenBank Submission: KX806314
> BS23339.complete
GAAGTTATCAGTCGACATGTGGTCGTTCTTCTCGCGCGACTCCTCGAAAG
ACTTCCCCTACGACATTGGCGAACCGGTGGGCGGCTTTGACCAATACTCC
ATATGGACGCTGCACAAGGCCAAGCGCAAGACGACGCTGGAGGAGGTGTC
TGTGTTCGTCTACGACATCCGTAGCGGATCCGACACCAAGTGCGAGCTGG
CCAAGGCGGCGCTGAAGCGCCTCAAGACATTGCGTCACCCCAGCATCCTG
CAGTATCTGGACTCGCTGGAAACGGACAAGATGTTGTACGTGGCCACCGA
GGCGGTGGATCCGCTGGGCACTTACTTTTCCAAGCTGGGCAGCGACAATG
TCCAAAAGGGCCTCTACCTGGCCTGGGGCATCTTCCAGATCACTCGCGCC
CTGTCCTTCCTCAACAACGATGGCAATCTGCGACACAACAATGTTTCCGC
CTGGTCGGTGTTTGTCAATGCCTCCGGCGAATGGAAACTGGGCAGCCTGG
AGTACGTCTCAGCGGCGGATGGTAATCCCATGCCGCCCGCCAAAATACCT
GTGACCCTGGAGGTCTACGATTCCCCCGAAAAGAACGATCCGAGCAAGCT
CAAGGCGGCCACCAAATGCTCCGTGGACATGTGGGGCCTGGGCTGCCTCG
TGTGGGAAGCTTTCAACGGTGTGCTCAAGCAACGCTCCAACCTCAAGGAT
ATAGAACACATACCCAAGTCCCTGCAATCGCTCTATTGTGAGCTGGTTGG
CGCCTCGCCTTCGAATCGTCCCAACCCGGCGGATATAATCACACGTTGCC
GCAAGCCTGGAGGCTTTTTCAAAAACGATTTGGTGGACACACTGCTCTTC
CTAGAGGAGATCCAAATCAAGGACAAGGCGGAGAAGAATCGCTTCTTCAG
TGGTCTGACCACGCATCTCGACAACTTTCCGGACAACGTGTGCAGGCATA
AGATTCTTCCACAGCTGATAACAGCCTACGAGTACGGAGATGCGGGCTCT
GCCGTGCTGGCTCCCATGTTTAAGCTGGGCAAACTGCTGGACGAGGTGGA
GTACCAGAAACGCATTGTGCCCTGCGTGGTCAAACTGTTCGCTTCCACGG
ATCGAGTGACGCGATCGCGCCTGCTGCAGCAGCTGGATCTGTTCATCGCG
CACTTGCAGCCACAGGTGGTCAACGATCAGATTTTCCCACAGGTGGCTCA
CGGGTTCCTAGACACCAACGCCACCATACGTGAGCAGACGGTCAAGTCGA
TTATCCACTTGGCGCCCAAGCTCAACTACAACAACCTGAATGTGGAGGTC
CTGCGTCACTTTGCCAGGCTGCAGGCGCGGGATGACCAAGGTGGAATTCG
CACCAATACGACGGTCTGTCTGGGCAAGATTGCGCCGCATTTGCATCCGC
AGGTGCGTCAGCGTGTGCTGGTCTCCGCTTTCATTCGTGCCATGCGGGAT
CCTTTTCCGCCGGCAAGAGTCGCCGGTGTCCTGGCGCTGGCCGCCACACA
GCAGTACTTTTTGCTCAGCGAGGTGGCCAACCGCGTTCTGCCATCACTGT
GTTCCCTCACCGTTGATCCGGAGAAGACGGTGCGCGATCCGGCGTTCAAA
ACTATCAGAGGCTTCTTGGGCAAACTGGAGAAGGTCTCCGAGGATCCCAG
TTTGCGGGAAACGATGGAGGCGGATGTTCACACGGCCACGCCTTCGATTG
GCAATGCGGCGGCCACATGGGCGGGATGGGCGGTGACGGCCGTCACAGCA
AAGTTCTATCGCAGCCAAAGTGATTCGTCTCGACCACGACCGCCTTTAAC
TGGACGCAATCTGTCCAAGCCAGCGTCGCTTGAACAACCATCGAGCAGCA
GTTTATCGACCACCACGAGCAGTGTTACCTCAATGACGTCGCTGGAGCAT
GAAAGCAATGACACCTCCGCCTCGGCCTCCGATTATGGCAACAACGATTG
GGACAACGAAAACTGGGGCGAAATGGATACCTCTCAGGATCCCAGCAGTC
CGCTGGCGGCCAGCTCCAATAATGGCGCCTTGATGGCAGCCAATGCCTTG
AGCGAAGTGCGCGACGGCTGGGACAACGAGGAGTGGGGCAGTCTCGAGGA
GGATCCGTGCGAGGAGGAGGAGCAGGCGGAGCAGGAGCAGCAGCAACAAC
AGCTGGCTAGACAATCGATATCATCCACGTCATCCAGTCAGCCAAATCAG
CGCCCGCTGCTGCCACATCAGCAGCAGTATCCACATCAGCAGCAGCTGCA
GCAGCACGAGCTAAACGATCTGATCGAGCCGCTGGCCAAGCTCAACTCGC
ACGTCACCTCGCCGTCGAAGCAGTCGATGCTCCGGCCAAAGGAGCTGCCC
AATCTATCCAGCAGCAACACATCGCCCACGTCGGCCACTGCCAATTGCAA
TAACATTAGCCCGCCTTCGTCGCATTTGAATAATTCGACGCATAATGCCA
ATTGGAATAGCGATTCGTGGGCCGACGGGGAGTTTGAGCCACTGGATGAA
TCGGGATTCGGCAATGCCAAACTGGACGAGGCCCGACGCAAGCGGGAGGA
GAAGAAGCTGCAGCGGCAGCGGGAGTTGGAGGCGCGACGGGCCCAGCGGG
CGAGCGGCCCCATGAAGCTGGGCGCCAAAAAGCTTTAAAAGCTTTCTAGA
CCAT
BS23339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yata-RA | 2622 | CG1973-PA | 1..2622 | 17..2638 | 13095 | 100 | Plus |
| yata-RB | 2622 | CG1973-PB | 1..2622 | 17..2638 | 13095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yata-RA | 3565 | CG1973-RA | 573..3197 | 17..2641 | 13110 | 100 | Plus |
| yata-RB | 4765 | CG1973-RB | 573..3197 | 17..2641 | 13110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29750979..29751623 | 1023..1667 | 3225 | 100 | Plus |
| 3R | 32079331 | 3R | 29750511..29750917 | 618..1024 | 2035 | 100 | Plus |
| 3R | 32079331 | 3R | 29752328..29752732 | 2107..2511 | 2025 | 100 | Plus |
| 3R | 32079331 | 3R | 29749791..29750168 | 17..394 | 1890 | 100 | Plus |
| 3R | 32079331 | 3R | 29750228..29750451 | 395..618 | 1105 | 99.6 | Plus |
| 3R | 32079331 | 3R | 29751693..29751858 | 1667..1832 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 29751923..29752069 | 1832..1978 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 29752829..29752960 | 2510..2641 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 29752139..29752267 | 1979..2107 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:37:53 has no hits.
BS23339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:10 Download gff for
BS23339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yata-RA | 566..3185 | 17..2636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:39 Download gff for
BS23339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yata-RB | 573..3192 | 17..2636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:51 Download gff for
BS23339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yata-RB | 573..3192 | 17..2636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:51 Download gff for
BS23339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29752830..29752955 | 2511..2636 | 100 | | Plus |
| 3R | 29749791..29750168 | 17..394 | 100 | -> | Plus |
| 3R | 29750228..29750451 | 395..618 | 99 | -> | Plus |
| 3R | 29750512..29750917 | 619..1024 | 100 | -> | Plus |
| 3R | 29750981..29751623 | 1025..1667 | 100 | -> | Plus |
| 3R | 29751694..29751858 | 1668..1832 | 100 | -> | Plus |
| 3R | 29751924..29752069 | 1833..1978 | 100 | -> | Plus |
| 3R | 29752139..29752267 | 1979..2107 | 100 | -> | Plus |
| 3R | 29752329..29752731 | 2108..2510 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:39 Download gff for
BS23339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25577861..25577989 | 1979..2107 | 100 | -> | Plus |
| arm_3R | 25577416..25577580 | 1668..1832 | 100 | -> | Plus |
| arm_3R | 25577646..25577791 | 1833..1978 | 100 | -> | Plus |
| arm_3R | 25576234..25576639 | 619..1024 | 100 | -> | Plus |
| arm_3R | 25575513..25575890 | 17..394 | 100 | -> | Plus |
| arm_3R | 25575950..25576173 | 395..618 | 99 | -> | Plus |
| arm_3R | 25576703..25577345 | 1025..1667 | 100 | -> | Plus |
| arm_3R | 25578051..25578453 | 2108..2510 | 100 | -> | Plus |
| arm_3R | 25578552..25578677 | 2511..2636 | 100 | | Plus |
BS23339.pep Sequence
Translation from 16 to 2637
> BS23339.pep
MWSFFSRDSSKDFPYDIGEPVGGFDQYSIWTLHKAKRKTTLEEVSVFVYD
IRSGSDTKCELAKAALKRLKTLRHPSILQYLDSLETDKMLYVATEAVDPL
GTYFSKLGSDNVQKGLYLAWGIFQITRALSFLNNDGNLRHNNVSAWSVFV
NASGEWKLGSLEYVSAADGNPMPPAKIPVTLEVYDSPEKNDPSKLKAATK
CSVDMWGLGCLVWEAFNGVLKQRSNLKDIEHIPKSLQSLYCELVGASPSN
RPNPADIITRCRKPGGFFKNDLVDTLLFLEEIQIKDKAEKNRFFSGLTTH
LDNFPDNVCRHKILPQLITAYEYGDAGSAVLAPMFKLGKLLDEVEYQKRI
VPCVVKLFASTDRVTRSRLLQQLDLFIAHLQPQVVNDQIFPQVAHGFLDT
NATIREQTVKSIIHLAPKLNYNNLNVEVLRHFARLQARDDQGGIRTNTTV
CLGKIAPHLHPQVRQRVLVSAFIRAMRDPFPPARVAGVLALAATQQYFLL
SEVANRVLPSLCSLTVDPEKTVRDPAFKTIRGFLGKLEKVSEDPSLRETM
EADVHTATPSIGNAAATWAGWAVTAVTAKFYRSQSDSSRPRPPLTGRNLS
KPASLEQPSSSSLSTTTSSVTSMTSLEHESNDTSASASDYGNNDWDNENW
GEMDTSQDPSSPLAASSNNGALMAANALSEVRDGWDNEEWGSLEEDPCEE
EEQAEQEQQQQQLARQSISSTSSSQPNQRPLLPHQQQYPHQQQLQQHELN
DLIEPLAKLNSHVTSPSKQSMLRPKELPNLSSSNTSPTSATANCNNISPP
SSHLNNSTHNANWNSDSWADGEFEPLDESGFGNAKLDEARRKREEKKLQR
QRELEARRAQRASGPMKLGAKKL*
BS23339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yata-PA | 873 | CG1973-PA | 1..873 | 1..873 | 4546 | 100 | Plus |
| yata-PB | 873 | CG1973-PB | 1..873 | 1..873 | 4546 | 100 | Plus |
| CG1951-PA | 835 | CG1951-PA | 31..820 | 15..737 | 326 | 21.6 | Plus |
| CG34356-PE | 834 | CG34356-PE | 34..608 | 15..518 | 290 | 22.3 | Plus |
| CG34356-PD | 834 | CG34356-PD | 34..608 | 15..518 | 290 | 22.3 | Plus |
