BS23340.complete Sequence
1010 bp assembled on 2011-02-07
GenBank Submission: KX805937
> BS23340.complete
GAAGTTATCAGTCGACATGCAAAGTAAACACCGCAAACTGCTGCTGCGCT
GCCTCCTGGTGCTGCCCCTCATCCTTCTGGTGGACTATTGCGGCCTGCTG
ACCCACCTGCACGAGCTGAACTTCGAGCGGCACTTTCACTACCCGCTGAA
CGATGACACTGGATCTGGGTCCGCATCCTCTGGACTGGACAAGTTCGCCT
ACCTGCGAGTGCCCTCGTTCACGGCAGAGGTGCCGGTTGACCAGCCTGCG
CGGCTCACGATGCTCATAAAGAGCGCGGTGGGCAATTCGCGACGTCGGGA
GGCCATTCGCCGGACTTGGGGCTACGAGGGTCGATTCTCAGACGTCCATC
TGCGTCGCGTGTTCCTGCTGGGCACGGCCGAGGATAGTGAGAAAGACGTG
GCTTGGGAGTCCCGCGAGCATGGCGACATTCTGCAGGCGGAGTTCACGGA
CGCCTACTTCAACAACACGCTGAAAACCATGCTGGGTATGCGCTGGGCTA
GCGATCAGTTCAATCGCAGCGAGTTCTATCTTTTCGTGGACGACGACTAC
TATGTTTCGGCCAAGAACGTGCTCAAGTTTCTGGGCAGGGGGCGTCAGAG
CCACCAGCCGGAGTTGCTGTTCGCCGGGCACGTGTTTCAGACATCCCCGC
TCCGCCACAAGTTCAGCAAGTGGTACGTTTCGTTGGAGGAATACCCCTTC
GATCGGTGGCCACCGTACGTGACCGCCGGCGCGTTCATTCTGTCGCAGAA
GGCACTGCGCCAGCTGTATGCCGCCAGCGTTCACCTGCCGCTCTTCCGGT
TCGACGACGTCTACCTGGGCATAGTGGCCTTGAAAGCGGGCATTTCCCTT
CAGCACTGCGACGACTTCCGCTTCCATCGGCCGGCGTACAAAGGTCCGGA
CAGCTATAGTTCGGTGATAGCCTCGCACGAATTCGGCGATCCCGAGGAGA
TGACGCGGGTATGGAACGAGTGCCGATCCGCCAATTACGCGTAGAAGCTT
TCTAGACCAT
BS23340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brn-RA | 978 | CG4934-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brn-RA | 1450 | CG4934-RA | 139..1126 | 11..998 | 4910 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4104480..4105467 | 11..998 | 4910 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:16:00 has no hits.
BS23340.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 11:56:52 Download gff for
BS23340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brn-RA | 143..1120 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:20 Download gff for
BS23340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brn-RA | 143..1120 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:59 Download gff for
BS23340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brn-RA | 145..1122 | 17..994 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:59 Download gff for
BS23340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4104486..4105463 | 17..994 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:20 Download gff for
BS23340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3998519..3999496 | 17..994 | 100 | | Plus |
BS23340.pep Sequence
Translation from 16 to 993
> BS23340.pep
MQSKHRKLLLRCLLVLPLILLVDYCGLLTHLHELNFERHFHYPLNDDTGS
GSASSGLDKFAYLRVPSFTAEVPVDQPARLTMLIKSAVGNSRRREAIRRT
WGYEGRFSDVHLRRVFLLGTAEDSEKDVAWESREHGDILQAEFTDAYFNN
TLKTMLGMRWASDQFNRSEFYLFVDDDYYVSAKNVLKFLGRGRQSHQPEL
LFAGHVFQTSPLRHKFSKWYVSLEEYPFDRWPPYVTAGAFILSQKALRQL
YAASVHLPLFRFDDVYLGIVALKAGISLQHCDDFRFHRPAYKGPDSYSSV
IASHEFGDPEEMTRVWNECRSANYA*
BS23340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brn-PA | 325 | CG4934-PA | 1..325 | 1..325 | 1732 | 100 | Plus |
| CG8668-PB | 585 | CG8668-PB | 341..570 | 79..311 | 270 | 28.5 | Plus |
| CG8668-PA | 585 | CG8668-PA | 341..570 | 79..311 | 270 | 28.5 | Plus |
| CG11357-PD | 434 | CG11357-PD | 125..349 | 74..280 | 258 | 31.6 | Plus |
| CG11357-PC | 434 | CG11357-PC | 125..349 | 74..280 | 258 | 31.6 | Plus |
