BS23341.complete Sequence
563 bp assembled on 2011-01-25
GenBank Submission: KX800560
> BS23341.complete
GAAGTTATCAGTCGACATGAATGCAAAAAGAAGTATGTTGACATTCCAAA
GGACGAGGGACAACGATATGGAACCAGAGTCCTACTGGCTGAATCCGCTC
TCATTCATTTTAGCCGATATGTTCGACGACTTGGCGGAGAACTTAAGGCG
GGGAGTTATTACCTTTTTTTGGGACCCCGAGCTGAACATGATCGACGCAT
TGACCCGGGATCAAGTTTGGGAAATGTACCTGTGCGTGCAAAGGATTCCA
AGAGACCTGAGGGGCGCAGAGATCAGCCGGAATAAATGGAGTTTTTTCGT
ACTTCGGGAATTCAGTCACAAAAAGGAAAGAAATGTAAATCTAAAGTGCA
GCTCTAGGCGAAAACGAAATGTTATTAAGGGACTGAAGACCACTTCAATT
TGCAAGCTAAGAAATGCTCGAACTAACGGTACCTGGACTGCTGGACTTTG
GACTCGACCCGGCCATGCGTACAGAGGCCCATCGGAAACGGTGTCGACTT
GGGACACAGTAAAGGACGCAGCGTGGTCAGAAGGGATTGTGGAGTAAAAG
CTTTCTAGACCAT
BS23341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30424-RB | 531 | CG30424-PB | 1..531 | 17..547 | 2655 | 100 | Plus |
| CG30424-RE | 567 | CG30424-PE | 90..567 | 70..547 | 2390 | 100 | Plus |
| CG30424-RD | 1170 | CG30424-PD | 693..1170 | 70..547 | 2390 | 100 | Plus |
| CG30424-RE | 567 | CG30424-PE | 1..54 | 17..70 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30424-RB | 910 | CG30424-RB | 99..629 | 17..547 | 2655 | 100 | Plus |
| CG30424-RE | 946 | CG30424-RE | 188..665 | 70..547 | 2390 | 100 | Plus |
| CG30424-RD | 1713 | CG30424-RD | 955..1432 | 70..547 | 2390 | 100 | Plus |
| CG30424-RE | 946 | CG30424-RE | 99..152 | 17..70 | 270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24965556..24965788 | 547..315 | 1165 | 100 | Minus |
| 2R | 25286936 | 2R | 24965844..24966041 | 316..119 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 24967146..24967200 | 71..17 | 275 | 100 | Minus |
| 2R | 25286936 | 2R | 24966106..24966154 | 118..70 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:31:44 has no hits.
BS23341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:50 Download gff for
BS23341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30424-RB | 86..614 | 17..545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:08 Download gff for
BS23341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30424-RB | 99..627 | 17..545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:26 Download gff for
BS23341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30424-RB | 99..627 | 17..545 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:26 Download gff for
BS23341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24965558..24965788 | 315..545 | 100 | <- | Minus |
| 2R | 24965846..24966041 | 119..314 | 100 | <- | Minus |
| 2R | 24966106..24966153 | 71..118 | 100 | <- | Minus |
| 2R | 24967147..24967200 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:08 Download gff for
BS23341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20853081..20853311 | 315..545 | 100 | <- | Minus |
| arm_2R | 20853369..20853564 | 119..314 | 100 | <- | Minus |
| arm_2R | 20853629..20853676 | 71..118 | 100 | <- | Minus |
| arm_2R | 20854670..20854723 | 17..70 | 100 | | Minus |
BS23341.pep Sequence
Translation from 16 to 546
> BS23341.pep
MNAKRSMLTFQRTRDNDMEPESYWLNPLSFILADMFDDLAENLRRGVITF
FWDPELNMIDALTRDQVWEMYLCVQRIPRDLRGAEISRNKWSFFVLREFS
HKKERNVNLKCSSRRKRNVIKGLKTTSICKLRNARTNGTWTAGLWTRPGH
AYRGPSETVSTWDTVKDAAWSEGIVE*
BS23341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30424-PB | 176 | CG30424-PB | 1..176 | 1..176 | 948 | 100 | Plus |
| CG30424-PE | 188 | CG30424-PE | 1..188 | 1..176 | 925 | 93.6 | Plus |
| CG30424-PD | 389 | CG30424-PD | 232..389 | 19..176 | 856 | 100 | Plus |
| CG30424-PC | 142 | CG30424-PC | 1..142 | 35..176 | 768 | 100 | Plus |
