BS23342.complete Sequence
683 bp assembled on 2011-01-25
GenBank Submission: KX802332
> BS23342.complete
GAAGTTATCAGTCGACATGCGCGTCTACCTGGCCCTGCCGCTCCTGCTGC
TGGGCATCGGCCTCAGTTTGGCCCAGTACCAGTATCAAGCGCCCCACCAA
ACCCTCGCCCAGCAATTCGCCGACGTGGTGGATGTGGTCGATCCTGCAGA
ACAATCTATCAAAGCAGTGCGACCACCGAAGAGCCGCAATCAGTGCACCG
CCAAGCAGAACTGCTTCTGCGGCACTCCGAATGTCAACCGTATCGTGGGC
GGCCAGCAGGTGCGCTCCAACAAGTATCCTTGGACCGCCCAATTGGTAAA
GGGTCGTCATTATCCCCGCCTCTTCTGCGGCGGTTCCCTAATCAATGATC
GCTATGTGCTGACCGCCGCCCATTGTGTGCATGGGAACAGGGATCAGATC
ACCATTCGCCTGCTCCAGATCGACAGATCCTCCCGGGATCCCGGCATTGT
GCGCAAGGTCGTCCAGACCACTGTGCATCCTAACTACGATCCCAACCGGA
TTGTCAACGATGTGGCGCTGCTCAAGCTGGAGTCCCCTGTTCCACTGACT
GGAAACATGCGTCCAGTCTGTCTGCCCGAGGCCAATCATAACTTTGATGG
CAAGACCGTGAGTACAAGTCTTGATTTATGTGCTAAACTGTATTTCCTTT
TATGTAGGCCTGAATAGAAGCTTTCTAGACCAT
BS23342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3355-RB | 651 | CG3355-PB | 1..651 | 17..667 | 3255 | 100 | Plus |
| CG3355-RA | 945 | CG3355-PA | 1..592 | 17..608 | 2960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3355-RB | 1399 | CG3355-RB | 88..746 | 17..675 | 3280 | 99.8 | Plus |
| CG3355-RA | 1096 | CG3355-RA | 36..627 | 17..608 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4651765..4652224 | 216..675 | 2285 | 99.8 | Plus |
| 2L | 23513712 | 2L | 4651490..4651688 | 17..215 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:31:49 has no hits.
BS23342.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:50 Download gff for
BS23342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3355-RB | 88..738 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:11 Download gff for
BS23342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3355-RB | 88..738 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:27 Download gff for
BS23342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3355-RB | 88..738 | 17..667 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:27 Download gff for
BS23342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4651490..4651688 | 17..215 | 100 | -> | Plus |
| 2L | 4651765..4652216 | 216..667 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:11 Download gff for
BS23342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4651490..4651688 | 17..215 | 100 | -> | Plus |
| arm_2L | 4651765..4652216 | 216..667 | 100 | | Plus |
BS23342.pep Sequence
Translation from 16 to 666
> BS23342.pep
MRVYLALPLLLLGIGLSLAQYQYQAPHQTLAQQFADVVDVVDPAEQSIKA
VRPPKSRNQCTAKQNCFCGTPNVNRIVGGQQVRSNKYPWTAQLVKGRHYP
RLFCGGSLINDRYVLTAAHCVHGNRDQITIRLLQIDRSSRDPGIVRKVVQ
TTVHPNYDPNRIVNDVALLKLESPVPLTGNMRPVCLPEANHNFDGKTVST
SLDLCAKLYFLLCRPE*
BS23342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3355-PB | 216 | CG3355-PB | 1..216 | 1..216 | 1146 | 100 | Plus |
| CG3355-PA | 314 | CG3355-PA | 1..197 | 1..197 | 1046 | 100 | Plus |
| CG4613-PC | 374 | CG4613-PC | 122..254 | 58..194 | 402 | 56.8 | Plus |
| CG4613-PB | 374 | CG4613-PB | 122..254 | 58..194 | 402 | 56.8 | Plus |
| CG4386-PA | 372 | CG4386-PA | 104..246 | 54..196 | 286 | 40.4 | Plus |
