BS23344.complete Sequence
2444 bp assembled on 2011-02-18
GenBank Submission: KX801932
> BS23344.complete
GAAGTTATCAGTCGACATGACCATGCCGAATGGTTTGGATGACCAGGAGA
AGCTGCTCGCTGAAGCCATTGGACTAGCGAGGAAGCAGGCCTTTCAAATG
AACCACTTTCTGGATAAGGAGCGTATGCTGGACTCGCTCAAGTGCGCCAG
CACCATGCTGGGCGAGCTGCGGACCTCCGTCCTTTCCCCCAAAAGTTACT
ACGAGCTGTACATGGCCGTCACCAACGAACTGTGCCACCTGGAGCTGTAC
CTCAGCGAGAAAATCGACAAGAAAACGGATTTGTACGAGCTCGTTCAGTA
CTCGCATACTATTGTGCCGCGGTTGTACCTCCTCATAACAGTGGGCATTG
TGTATATCAAGAATGACCCTACGCTGAAGCGCAGCATTCTAAAGGACCTG
GTCGAGATGTGCCGCGGTGTCCAGCATCCGTTGCGAGGCCTCTTTCTGCG
CAACTACCTGCTGCAGTGCACCCGGAACATCCTGCCCGATGTGATGGTTG
AGGAGAACGAGCACGAGGGCAATGTCTATGATGCCATCGACTTCGTGCTG
ACCAACTTTGCCGAGATGAACAAGCTGTGGGTCCGCATGCAGCACCAGGG
ACACTCCAGCGAAAAGACGCGTCGCGAGAAGGAGCGTGAGGAACTAAAGA
TCCTGGTAGGCACTAATCTGGTGCGGTTGTCCCAGCTGGAGTCGGCCACT
CTGGAAATCTACCAGCGACTCATTCTACCCGGCATCCTGGAGCAGGTGGT
CAGCTGTCGCGATGCAATTGCACAGGAGTACCTAATGGAGTGCATCATCC
AGGTGTTCCCCGACGAGTTCCACCTAAAGACACTTGACCCCTTCCTAAAG
TCCTGCGCTCAGCTGGAGACCGGTGTTAATGTGAAGAACATCATAATATC
GTTAATCGAACGATTGGCTGCCTATAACCAGCGAAGTGGCAAGACAAGTG
GTAATGCCATCGATGCCATCATACCCGCCGAGGTGGAACTGTTTGAAGTT
TTCAGTGTCCAAGTGGCTAACATCGTGCAGACCCGAATGGACATGCCGTT
GGAGGACACCATATCGCTGCAGGTTGCTCTGCTGAGCTTGGCTCAGAAAG
TGTATCCCGATCGAGTTGACTATGTAGATAAGGTGCTGGGCACAACCGCT
CAAATTTTGCAGCGCATGAACATGAACAACATCTCCCATTTGCTATCTGT
AAACCAGGAGTTATCGCGCCTTCTGCGCATCTGTATCGACTTCTACAACA
ACGCCTTGACCATAATTCAACTTCAAAACTTTTGCCCGCTGCTCGAAAAG
TTTGACTACACATCCCGTAAATCGCTGGCCCTGTACCTAGTTATGAACAT
CTTGGACAACGAAACCCTAGTTCCAACAGCTGATCAGGCGGATAGTCTGC
TGACCATCATTACGCCGTTGATTAAGGACGATGATACGAACAAAGAAAAC
GGCGCGGCAGCAGGAAATACGACTCCGGATGCCGAGGAGTTTGCCGAAGA
GCAGGGGGTTGTGGCACGATTTATTCACCTCATGCGCTCAGATGAACCGG
ACATGCAGTATAAAATGCTGCAGACCGCCCGAAAGCATCTGGGAAATGGG
GGCGGGCAAAGGCTAAAGCATGTCCTACCTCCGCTTGTCTTCGCCGCCTA
TCAGCTGGCCTTCAAGTACAAGGCGATCGCCGAGCAGGATGAGAACTGGG
ACAAGAAGTGTCAGAAAATCGTGCAATACTGCCACAGTACCATCAGTGCG
CTGGCCAAAGCCGATCTCGCAGACCTAGCCCTGCGTCTATACCTGCAAGG
TGCCCTGGTCATTGGGGAGATCGGTTATACGAATCACGAAACGGTGGCAT
ACGAATTCATGACCCAGGCCTTCTCCCTCTACGAAGACGAGATCTCCGAC
TCAAAGGCCCAGCTTGCAGCCATAACGCTCATCATGTCCACTTTTGAACA
AATGTCCTGCTTTGGCGAGGAGAACGCTGAGCCGCTTAGGACGAATTGTG
CGCTGGCTGCTTCAAAATTGCTGAAAAAACCGGATCAATGTCGCGGTGTT
GTGGCCTGTGCGGCGCTTTTCTGGAGTGGAAAGCAAAACGGCGAGGAGAT
GCGTGACGAGAAGCGAACTTTGGACTGCTTAAAGAAGGGTGCTCGCATCG
CTTCGCAGTGCTTGGATACCGGAGTGCAAGTTCAATTGTATGTGGAGCTG
CTGAATCACTATCTGTTTTACTTCGAACGCGGCAACTCGCTTATCACTGT
GGCTATGCTCAACCAGCTAATTGCCAAGGTGAATGAGGAGCTGCCCAACC
TGGAGCCCAGCGAGGAGACCAAACAGATCGAGAGCCATTACAAGAACACG
CTGGCACACATCCGCAGTCGCATGGAATCCAATGACTCGTCGCTGGAGGT
CTCCTTTGCGGGCATAACTCTCAATTAGAAGCTTTCTAGACCAT
BS23344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps35-RA | 2412 | CG5625-PA | 1..2412 | 17..2428 | 12060 | 100 | Plus |
| Vps35-RB | 2469 | CG5625-PB | 60..2469 | 19..2428 | 12050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps35-RA | 3015 | CG5625-RA | 121..2532 | 17..2428 | 12060 | 100 | Plus |
| Vps35-RB | 3369 | CG5625-RB | 349..2758 | 19..2428 | 12050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22186768..22187501 | 210..943 | 3670 | 100 | Plus |
| 2R | 25286936 | 2R | 22188244..22188809 | 1518..2083 | 2830 | 100 | Plus |
| 2R | 25286936 | 2R | 22187852..22188190 | 1180..1518 | 1695 | 100 | Plus |
| 2R | 25286936 | 2R | 22187558..22187795 | 942..1179 | 1190 | 100 | Plus |
| 2R | 25286936 | 2R | 22186516..22186706 | 19..209 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 22188868..22189051 | 2083..2266 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 22189111..22189275 | 2264..2428 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:40:40 has no hits.
BS23344.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:10 Download gff for
BS23344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps35-RA | 115..2526 | 17..2428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:02 Download gff for
BS23344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps35-RA | 121..2532 | 17..2428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:59 Download gff for
BS23344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps35-RA | 121..2532 | 17..2428 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:59 Download gff for
BS23344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22186515..22186706 | 17..209 | 99 | -> | Plus |
| 2R | 22186768..22187501 | 210..943 | 100 | -> | Plus |
| 2R | 22187560..22187795 | 944..1179 | 100 | -> | Plus |
| 2R | 22187852..22188190 | 1180..1518 | 100 | -> | Plus |
| 2R | 22188245..22188808 | 1519..2082 | 100 | -> | Plus |
| 2R | 22188868..22189051 | 2083..2266 | 100 | -> | Plus |
| 2R | 22189114..22189275 | 2267..2428 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:02 Download gff for
BS23344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18074020..18074211 | 17..209 | 99 | -> | Plus |
| arm_2R | 18074273..18075006 | 210..943 | 100 | -> | Plus |
| arm_2R | 18075065..18075300 | 944..1179 | 100 | -> | Plus |
| arm_2R | 18075357..18075695 | 1180..1518 | 100 | -> | Plus |
| arm_2R | 18075750..18076313 | 1519..2082 | 100 | -> | Plus |
| arm_2R | 18076373..18076556 | 2083..2266 | 100 | -> | Plus |
| arm_2R | 18076619..18076780 | 2267..2428 | 100 | | Plus |
BS23344.pep Sequence
Translation from 16 to 2427
> BS23344.pep
MTMPNGLDDQEKLLAEAIGLARKQAFQMNHFLDKERMLDSLKCASTMLGE
LRTSVLSPKSYYELYMAVTNELCHLELYLSEKIDKKTDLYELVQYSHTIV
PRLYLLITVGIVYIKNDPTLKRSILKDLVEMCRGVQHPLRGLFLRNYLLQ
CTRNILPDVMVEENEHEGNVYDAIDFVLTNFAEMNKLWVRMQHQGHSSEK
TRREKEREELKILVGTNLVRLSQLESATLEIYQRLILPGILEQVVSCRDA
IAQEYLMECIIQVFPDEFHLKTLDPFLKSCAQLETGVNVKNIIISLIERL
AAYNQRSGKTSGNAIDAIIPAEVELFEVFSVQVANIVQTRMDMPLEDTIS
LQVALLSLAQKVYPDRVDYVDKVLGTTAQILQRMNMNNISHLLSVNQELS
RLLRICIDFYNNALTIIQLQNFCPLLEKFDYTSRKSLALYLVMNILDNET
LVPTADQADSLLTIITPLIKDDDTNKENGAAAGNTTPDAEEFAEEQGVVA
RFIHLMRSDEPDMQYKMLQTARKHLGNGGGQRLKHVLPPLVFAAYQLAFK
YKAIAEQDENWDKKCQKIVQYCHSTISALAKADLADLALRLYLQGALVIG
EIGYTNHETVAYEFMTQAFSLYEDEISDSKAQLAAITLIMSTFEQMSCFG
EENAEPLRTNCALAASKLLKKPDQCRGVVACAALFWSGKQNGEEMRDEKR
TLDCLKKGARIASQCLDTGVQVQLYVELLNHYLFYFERGNSLITVAMLNQ
LIAKVNEELPNLEPSEETKQIESHYKNTLAHIRSRMESNDSSLEVSFAGI
TLN*
BS23344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps35-PA | 803 | CG5625-PA | 1..803 | 1..803 | 4086 | 100 | Plus |
| Vps35-PB | 822 | CG5625-PB | 21..822 | 2..803 | 4081 | 100 | Plus |
