BS23345.complete Sequence
872 bp assembled on 2011-01-25
GenBank Submission: KX801972
> BS23345.complete
GAAGTTATCAGTCGACATGAGAATAGTTGGATCCAGTATGCTGGCAGCCC
TCAAGCGGCTATCAACGAACCAACCCCCCACCTTGGTCAGTAACATCCGG
TACCTGAGCTCGTTTGGAACCATGAGCCTGCCGGAGCGCCAGCCCTTTTC
TCCAGACTTCTTCTTCCGTCAACTTTTTGATGGAGAAAGCAGCACCTATA
GCTACCTTCTGGCCGATCTAAAGAATGGTCAGGCCGTAATCATTGATCCT
GTTTTGGAGCAGGCGAAACGAGATGCCCAGCTGGTCAAGGATCTGGGCTT
CGAGTTGAAGTATGCCATCAACACACACATGCATGCGGATCACATAACGG
GCAGTGGCTGGTTGAGGAAGTTAACTGGGTGTCAATCTGTGATTGCTGCC
GCCAGTGGAGCCAAGGCGGATCGTCACCTGAATGAAGGGGATCGCATAGA
TTTCGGCACCCATGTGATTGATGCTCTGGCCACTCCGGGACACACAAATG
GCTGCATGACCTATGTGATCAAGGATCAGGGTTGTGTCTTTACCGGAGAT
ACTCTCCTGATACGAGGCTGTGGACGCACCGATTTCCAGGAAGGCTGCCC
ACGTAATCTCTACGAGAATGTGCACAGTAAGATCTTCACACTCCCGGAAA
ACTTTCGCATATATCCGGCGCACGACTATAAAGGTCAAATGGAAAGCAGT
GTGTGGGAGGAGAAGCGGTATAACCCCAGACTGACTAAGGATATTGAAGA
GTTTGTCAAAATCATGGAAAACCTAAATTTACCATATCCCAAGAAAATAG
ATGCCTCGCTGCCCGCCAATCGAGAGTGCGGGGTGTACGATATACCCAAG
GAATAAAAGCTTTCTAGACCAT
BS23345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30022-RB | 840 | CG30022-PB | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30022-RB | 1356 | CG30022-RB | 417..1256 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11387545..11387908 | 681..318 | 1820 | 100 | Minus |
| 2R | 25286936 | 2R | 11388208..11388363 | 172..17 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 11388000..11388148 | 317..169 | 730 | 99.3 | Minus |
| 2R | 25286936 | 2R | 11387372..11387490 | 800..682 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 2801494..2801612 | 682..800 | 565 | 98.3 | Plus |
| 2R | 25286936 | 2R | 2374937..2375055 | 682..800 | 565 | 98.3 | Plus |
| 2R | 25286936 | 2R | 2374640..2374775 | 169..304 | 455 | 89 | Plus |
| 2R | 25286936 | 2R | 2374785..2374882 | 584..681 | 445 | 96.9 | Plus |
| 2R | 25286936 | 2R | 2801249..2801359 | 169..279 | 420 | 91.9 | Plus |
| 2R | 25286936 | 2R | 2801354..2801439 | 596..681 | 400 | 97.7 | Plus |
| 2R | 25286936 | 2R | 11387260..11387318 | 856..798 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:31:58 has no hits.
BS23345.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:51 Download gff for
BS23345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30022-RB | 415..1252 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:15 Download gff for
BS23345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30022-RB | 417..1254 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:32 Download gff for
BS23345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30022-RB | 417..1254 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:32 Download gff for
BS23345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11387545..11387908 | 318..681 | 100 | <- | Minus |
| 2R | 11387262..11387315 | 801..854 | 100 | <- | Minus |
| 2R | 11388000..11388144 | 173..317 | 100 | <- | Minus |
| 2R | 11388208..11388363 | 17..172 | 100 | | Minus |
| 2R | 11387372..11387490 | 682..800 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:15 Download gff for
BS23345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7274767..7274820 | 801..854 | 100 | <- | Minus |
| arm_2R | 7274877..7274995 | 682..800 | 100 | <- | Minus |
| arm_2R | 7275050..7275413 | 318..681 | 100 | <- | Minus |
| arm_2R | 7275505..7275649 | 173..317 | 100 | <- | Minus |
| arm_2R | 7275713..7275868 | 17..172 | 100 | | Minus |
BS23345.pep Sequence
Translation from 16 to 855
> BS23345.pep
MRIVGSSMLAALKRLSTNQPPTLVSNIRYLSSFGTMSLPERQPFSPDFFF
RQLFDGESSTYSYLLADLKNGQAVIIDPVLEQAKRDAQLVKDLGFELKYA
INTHMHADHITGSGWLRKLTGCQSVIAAASGAKADRHLNEGDRIDFGTHV
IDALATPGHTNGCMTYVIKDQGCVFTGDTLLIRGCGRTDFQEGCPRNLYE
NVHSKIFTLPENFRIYPAHDYKGQMESSVWEEKRYNPRLTKDIEEFVKIM
ENLNLPYPKKIDASLPANRECGVYDIPKE*
BS23345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30022-PB | 279 | CG30022-PB | 1..279 | 1..279 | 1479 | 100 | Plus |
| CG4365-PB | 271 | CG4365-PB | 25..188 | 61..221 | 209 | 32.1 | Plus |
| CG4365-PA | 305 | CG4365-PA | 59..222 | 61..221 | 209 | 32.1 | Plus |
| CG4365-PC | 348 | CG4365-PC | 102..265 | 61..221 | 209 | 32.1 | Plus |
