BS23348.complete Sequence
1133 bp assembled on 2011-01-25
GenBank Submission: KX806196
> BS23348.complete
GAAGTTATCAGTCGACATGAAAATTCTTTCAAAAAAACGTCTCCTGCGTC
AAGCTGGTCTTATGCGGCGAGGACCTCGGAAAGCAACATCACCTCTAGAT
CGAGTTTACAGAGAAATAGCAGTTTTAAAGAAACTTGATCATCCAAACGT
CGTAAAGTTGGTAGAAGTGCTGGATGACCCACTTGAAGATTCATTATATA
TGGTTTTTGAATTGGTAAAACAAGGTGAAGTTCTTAGGATTCCAACAGAT
AATCCCTTGTCTGAAAAAAGGGCTTGGAGTATATTTCGGGAGTCTTTACT
TGGATTGGAATATTTGCATCATCAAAAAATTATCCATGCCGACATTAAGC
CTGGAAATTTATTATTAACTGAATTTGGACATGTAAAAATAGCTGATCTT
GGCGTATGCAATGAGTTCCTTGGAGATGATGCAACAATAAGTAATGGATC
AACGGCTGGAACTCCAGCTTTCAGGGCTCCTGAAACTCTTATCCCTGGAC
AGAACGAATATTGTGGCAGGGCGGCAGATGTCTGGGCCTTAGGCGCTACT
CTATATTCCTTAATATTCGGAAATGTGCCGTTTCTAGCTGATTCAGTACC
CTTACTGTATGAAAAAATTAAACAAGATTCTGTCAAATTTCCAGAAAACC
ACAAAGTAACTGAAAATTTAAAAAGTTGCATAGTTCAAATGTTGGAAAAG
AATCCGACGCAGAGAATTACTATTCCCCAGTTAAAGACTAGTAAATGGGT
AACTTCTGATGGGGACTATCCCTTGCCGACCGAAGAAGAAAATTGTTGCT
TGGTACAAGTAGACGACGAAGATATAGACTCCGTCGTGCGCAGCATTCCT
AAATTGGACACACTTATATTAATTAAAACAATGTTAAAAAAGCATTCATT
TGGCAACCCGTTTGTAAAAGGATGTTCTGGAACATCATCATCGCTCGCGG
GCTGCTCGAGGATTGAAAGGTTCATACGCGCAGGTCGATCTAATTCAGCA
CCTGGTTCATATCATATGTCAACAGCCAGACAGCCTTCGTCGGATACTCT
CCTGCCATCACTAATGGAACATTGCTCTACTCAATGTAATGAAGGAACTC
ATAGTTTTGATTATTAGAAGCTTTCTAGACCAT
BS23348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17698-RD | 2031 | CG17698-PD | 931..2031 | 17..1117 | 5490 | 99.9 | Plus |
| CG17698-RA | 1101 | CG17698-PA | 1..1101 | 17..1117 | 5490 | 99.9 | Plus |
| CG17698-RF | 2085 | CG17698-PF | 1283..2085 | 315..1117 | 4000 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17698-RD | 2506 | CG17698-RD | 1207..2309 | 17..1119 | 5500 | 99.9 | Plus |
| CG17698-RA | 1582 | CG17698-RA | 283..1385 | 17..1119 | 5500 | 99.9 | Plus |
| CG17698-RF | 2560 | CG17698-RF | 1559..2363 | 315..1119 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23746247..23746544 | 17..314 | 1490 | 100 | Plus |
| 3L | 28110227 | 3L | 23748422..23748716 | 735..1029 | 1460 | 99.7 | Plus |
| 3L | 28110227 | 3L | 23748138..23748373 | 501..736 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 23747873..23748060 | 315..502 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 23748770..23748861 | 1028..1119 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:31:30 has no hits.
BS23348.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:48 Download gff for
BS23348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RB | 1209..2309 | 17..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:03 Download gff for
BS23348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RA | 283..1383 | 17..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:20 Download gff for
BS23348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RA | 283..1383 | 17..1117 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:20 Download gff for
BS23348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23748772..23748859 | 1030..1117 | 100 | | Plus |
| 3L | 23748140..23748373 | 503..736 | 100 | -> | Plus |
| 3L | 23746247..23746544 | 17..314 | 100 | -> | Plus |
| 3L | 23748424..23748716 | 737..1029 | 99 | -> | Plus |
| 3L | 23747873..23748060 | 315..502 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:03 Download gff for
BS23348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23739347..23739644 | 17..314 | 100 | -> | Plus |
| arm_3L | 23740973..23741160 | 315..502 | 100 | -> | Plus |
| arm_3L | 23741240..23741473 | 503..736 | 100 | -> | Plus |
| arm_3L | 23741524..23741816 | 737..1029 | 99 | -> | Plus |
| arm_3L | 23741872..23741959 | 1030..1117 | 100 | | Plus |
BS23348.pep Sequence
Translation from 16 to 1116
> BS23348.pep
MKILSKKRLLRQAGLMRRGPRKATSPLDRVYREIAVLKKLDHPNVVKLVE
VLDDPLEDSLYMVFELVKQGEVLRIPTDNPLSEKRAWSIFRESLLGLEYL
HHQKIIHADIKPGNLLLTEFGHVKIADLGVCNEFLGDDATISNGSTAGTP
AFRAPETLIPGQNEYCGRAADVWALGATLYSLIFGNVPFLADSVPLLYEK
IKQDSVKFPENHKVTENLKSCIVQMLEKNPTQRITIPQLKTSKWVTSDGD
YPLPTEEENCCLVQVDDEDIDSVVRSIPKLDTLILIKTMLKKHSFGNPFV
KGCSGTSSSLAGCSRIERFIRAGRSNSAPGSYHMSTARQPSSDTLLPSLM
EHCSTQCNEGTHSFDY*
BS23348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17698-PA | 366 | CG17698-PA | 1..366 | 1..366 | 1909 | 100 | Plus |
| CG17698-PD | 676 | CG17698-PD | 311..676 | 1..366 | 1909 | 100 | Plus |
| CG17698-PF | 694 | CG17698-PF | 311..694 | 1..366 | 1877 | 95.1 | Plus |
| CG17698-PE | 616 | CG17698-PE | 311..490 | 1..162 | 797 | 89.4 | Plus |
| CG17698-PE | 616 | CG17698-PE | 490..616 | 240..366 | 673 | 99.2 | Plus |
| AMPKalpha-PC | 582 | CG3051-PC | 58..283 | 15..248 | 338 | 32.8 | Plus |
