BS23353.complete Sequence
740 bp assembled on 2011-01-25
GenBank Submission: KX804435
> BS23353.complete
GAAGTTATCAGTCGACATGGCATCCGGCGGCTTAACATGTGTAAAATACT
TGACATTCTTTTGCAATCTTCTTTTTGCGCTCACTGGGCTTCTTATTTTT
CTGGTGGGAGGCATGGTCCAACTAAACTATGCACATTATTCGAACTTCGT
TAGCGATCACGTCTGGACCGCTCCTATCATACTTATGATTGTCGGTGCCG
CTGTGGCAGTCATTTGCTTCTTGGGATGTTGTGGAGCCTTAAAAGAGAGC
AGCTGTATGATACTTAGCTTTGCCCTTCTTGCCGTCGTGATATTTTTGTT
CGAGATCGGACTGGGCCTTGCTGGCTATGTGAAGCATACCGGTCTTCATC
AGATCATGGAGAGTCAGTTTAACTCGACCATGCAGCACTACAAGGAACGG
GCCGACTATCGCGATGCTTGGACTTTGCTGCAAACCGAGCTAGATTGTTG
CGGCATCAATGGGCCCAACGACTGGGAAACCGTTTACCGTAATAGTACCC
TACCTGCAGCCTGCTGCTCTGTAATTAATTTAAGCGAGGCCAAGGAATGT
ACAAATACTCACGCAACTCAGCATGGCTGCTTGCAGAAGCTCTTAGAGAT
TTTGGATTCAAAGACCTTAATTTTGGCCTCCGTTGTTTTGGGAGTGGCGG
GTATACAGATGCTCACTATACTGTTCGCTTGCTGCCTCTATCGTTCGTTT
CGCAGGAGCTACGATCATGTTTAAAAGCTTTCTAGACCAT
BS23353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp39D-RB | 708 | CG8666-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp39D-RB | 2359 | CG8666-RB | 186..895 | 17..726 | 3550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21356103..21356686 | 79..662 | 2905 | 99.8 | Plus |
2L | 23513712 | 2L | 21356738..21356807 | 657..726 | 350 | 100 | Plus |
2L | 23513712 | 2L | 21355532..21355594 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:32:07 has no hits.
BS23353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:53 Download gff for
BS23353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp39D-RB | 190..895 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:19 Download gff for
BS23353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp39D-RB | 186..891 | 17..722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:36 Download gff for
BS23353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp39D-RB | 186..891 | 17..722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:36 Download gff for
BS23353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21355532..21355594 | 17..79 | 100 | -> | Plus |
2L | 21356104..21356682 | 80..658 | 100 | -> | Plus |
2L | 21356740..21356803 | 659..722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:19 Download gff for
BS23353.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21355532..21355594 | 17..79 | 100 | -> | Plus |
arm_2L | 21356104..21356682 | 80..658 | 100 | -> | Plus |
arm_2L | 21356740..21356803 | 659..722 | 100 | | Plus |
BS23353.pep Sequence
Translation from 16 to 723
> BS23353.pep
MASGGLTCVKYLTFFCNLLFALTGLLIFLVGGMVQLNYAHYSNFVSDHVW
TAPIILMIVGAAVAVICFLGCCGALKESSCMILSFALLAVVIFLFEIGLG
LAGYVKHTGLHQIMESQFNSTMQHYKERADYRDAWTLLQTELDCCGINGP
NDWETVYRNSTLPAACCSVINLSEAKECTNTHATQHGCLQKLLEILDSKT
LILASVVLGVAGIQMLTILFACCLYRSFRRSYDHV*
BS23353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp39D-PB | 235 | CG8666-PB | 1..235 | 1..235 | 1241 | 100 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 1..235 | 1..230 | 380 | 35.1 | Plus |
Tsp29Fa-PC | 248 | CG9494-PC | 3..239 | 1..229 | 352 | 29.5 | Plus |
Tsp29Fa-PB | 248 | CG9494-PB | 3..239 | 1..229 | 352 | 29.5 | Plus |
Tsp29Fa-PA | 248 | CG9494-PA | 3..239 | 1..229 | 352 | 29.5 | Plus |