Clone BS23353 Report

Search the DGRC for BS23353

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:233
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptTsp39D-RB
Protein status:BS23353.pep: full length peptide match
Sequenced Size:740

Clone Sequence Records

BS23353.complete Sequence

740 bp assembled on 2011-01-25

GenBank Submission: KX804435

> BS23353.complete
GAAGTTATCAGTCGACATGGCATCCGGCGGCTTAACATGTGTAAAATACT
TGACATTCTTTTGCAATCTTCTTTTTGCGCTCACTGGGCTTCTTATTTTT
CTGGTGGGAGGCATGGTCCAACTAAACTATGCACATTATTCGAACTTCGT
TAGCGATCACGTCTGGACCGCTCCTATCATACTTATGATTGTCGGTGCCG
CTGTGGCAGTCATTTGCTTCTTGGGATGTTGTGGAGCCTTAAAAGAGAGC
AGCTGTATGATACTTAGCTTTGCCCTTCTTGCCGTCGTGATATTTTTGTT
CGAGATCGGACTGGGCCTTGCTGGCTATGTGAAGCATACCGGTCTTCATC
AGATCATGGAGAGTCAGTTTAACTCGACCATGCAGCACTACAAGGAACGG
GCCGACTATCGCGATGCTTGGACTTTGCTGCAAACCGAGCTAGATTGTTG
CGGCATCAATGGGCCCAACGACTGGGAAACCGTTTACCGTAATAGTACCC
TACCTGCAGCCTGCTGCTCTGTAATTAATTTAAGCGAGGCCAAGGAATGT
ACAAATACTCACGCAACTCAGCATGGCTGCTTGCAGAAGCTCTTAGAGAT
TTTGGATTCAAAGACCTTAATTTTGGCCTCCGTTGTTTTGGGAGTGGCGG
GTATACAGATGCTCACTATACTGTTCGCTTGCTGCCTCTATCGTTCGTTT
CGCAGGAGCTACGATCATGTTTAAAAGCTTTCTAGACCAT

BS23353.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp39D-RB 708 CG8666-PB 1..708 17..724 3540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp39D-RB 2359 CG8666-RB 186..895 17..726 3550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21356103..21356686 79..662 2905 99.8 Plus
2L 23513712 2L 21356738..21356807 657..726 350 100 Plus
2L 23513712 2L 21355532..21355594 17..79 315 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:32:07 has no hits.

BS23353.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:53 Download gff for BS23353.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp39D-RB 190..895 17..722 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:19 Download gff for BS23353.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp39D-RB 186..891 17..722 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:36 Download gff for BS23353.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp39D-RB 186..891 17..722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:36 Download gff for BS23353.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21355532..21355594 17..79 100 -> Plus
2L 21356104..21356682 80..658 100 -> Plus
2L 21356740..21356803 659..722 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:19 Download gff for BS23353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21355532..21355594 17..79 100 -> Plus
arm_2L 21356104..21356682 80..658 100 -> Plus
arm_2L 21356740..21356803 659..722 100   Plus

BS23353.pep Sequence

Translation from 16 to 723

> BS23353.pep
MASGGLTCVKYLTFFCNLLFALTGLLIFLVGGMVQLNYAHYSNFVSDHVW
TAPIILMIVGAAVAVICFLGCCGALKESSCMILSFALLAVVIFLFEIGLG
LAGYVKHTGLHQIMESQFNSTMQHYKERADYRDAWTLLQTELDCCGINGP
NDWETVYRNSTLPAACCSVINLSEAKECTNTHATQHGCLQKLLEILDSKT
LILASVVLGVAGIQMLTILFACCLYRSFRRSYDHV*

BS23353.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp39D-PB 235 CG8666-PB 1..235 1..235 1241 100 Plus
Tsp47F-PB 239 CG9033-PB 1..235 1..230 380 35.1 Plus
Tsp29Fa-PC 248 CG9494-PC 3..239 1..229 352 29.5 Plus
Tsp29Fa-PB 248 CG9494-PB 3..239 1..229 352 29.5 Plus
Tsp29Fa-PA 248 CG9494-PA 3..239 1..229 352 29.5 Plus