BS23356.complete Sequence
2516 bp assembled on 2011-02-18
GenBank Submission: KX802716
> BS23356.complete
GAAGTTATCAGTCGACATGTCGCGTATGTCGCATATGCTAGCACTACTAC
TGGTACTAATTGCCAGTAGTCAGGCGCTCGAGGGCGTGGTCCAGCCCACT
TGCAATCTAAAGGACAATTGCAATTTGGGCGATAATCTTCTGGCCGGAAC
AAATTCCGCATCCGATGCTGGCGATGTGTCTGCCGATAAGCTGGAGAGCA
AAATTGCATCGATTTTCGAGGATAAGGTCAACTATAGTCTAAAGTTATTT
GCGGACGATGCGACGACAACAATCCTGGAATATCAAACGGCCAATTTGAG
TCAGTTGCATGCGGTAACGCCTGGAAATTACACGATACACCAGATGGAAC
AGGCGGAGGATGATGACGACCAAGTGGAGGAGGATGAAAGGGCCTATTTG
TACAACATTGGCAAGCGTTTTCTGGCCATTACGCAACCCTTCGACGCGGC
CAGAAATCCGGATGCCTCGACTTTGTGTCGCCGGCAGATGCATCAGTTTC
TGAACGCCTTGGACAACTTCGATCTGTGGGCTCTGAAGATGCACGACTCC
AGTGGCAAATTGAACTCGGGCATTCTGAATGGCAACATCAATCAACCCGG
CGATTTTGACCAGTGCCTGGGCATTCAGCAACGCATGAATCAGGATCAGG
ATGCGGGCCAGGATCAGGATGGTGACTCCATCATTCGGGGCCAGTATTGT
TTGGCCTATGCCCAGCCCGTTTTGCCACACAATTCGAAGCGATTGAAGAG
TTTCTTCAAGCTGATCCAATCACATGGACCTTTTAAGAGCGAGTTCAACG
ACCCCGGCCACCGAGTGCCCCGCTACTCCTTGATCAACTGGGGCCTCTGT
GTGCCCTCCGGCTGCTCCGCCCGCGATGTGGAGTACAGTGTGGCCGAGTA
TCTGGGCAACCAGACCGCTTCCACGGGCATCACCTTCAATGTGCGCGTGG
AGCCCCAGATGTGCCAGGTGCGCGATCAGCGGCCCTGGGATCGGAACACC
ACGTGGGCGGTGCGCTTCTTTCTGCTCGTGCTCTCCGTGGCCGTACTGTC
CACCATCTACGATCGGTCCACCAAGTCGCAGCCCAAGCAGAATCCCTGGT
TCACGGCCTTCTCGCTGGACAAGAACCTGCGCTGGCTCTTCAGCACGAGC
AGTGCTCCCGGAGACATTGAAGCGGTGCATGGCATCCGCTTCCTGAACGC
CATCATGCTGATCTTTTCGCACAAGTCCATGGCCATGTTCTTCAATCCGT
ACAACAATCGCACCGCCATGTCAGAGAGTCTGGGTCAGCCGTGGACGGTC
ATTGGACGAGCTGCCTCCCTGTACACGGATCCCTTCCTGCTCTTCAGTGG
AATGCTGACATCCTACTCCCTCTTTGGTCGCCTCATGAAGCAGCAACCCA
TCAGGCTGAAGAACGAGTACATTAGTCGGCTGATGAGGATTGTTCCGCCC
CTGGCCGCCTTGATACTCTTCTGCACGTATGTGCTGCCTCTGTGGGGCAG
TGGACCCCAGTGGAATCTGGTGGTGGGCCACCATGCGGACATCTGCAAGA
AGAACTGGTGGCGCAACCTGCTCTTCATTCACAACTACTTCGGATTCAGC
GAAATGTGCCTGACGCACACGCACCATCTGGGCATCGATACGGAACTCTT
TGCGGTGGCTCCACTCCTCATCCTGGCACTGTGGCGGTGGCCAAGACGTG
GCCTCTTCGCCCTGCTGCTGCTCTGCACGGTGGGTACGGCGGCTAGGTAC
TACACCACGATTGTCAACCAGCTATCCAACTATATCTACTTTGGTACCAA
CATTCAGCGCCTGTTCCGCACCGCCGACTACATGTACTCCTTCCCGCCCC
ACCGCTCCACGGTCTACATCATGGGCATCCTGCTGGGCTATGTGTTGCGC
AAGTACCAGAATGCCCGGCTGAGCAGCCTGCAGCTGCGACTTGGTTGGCT
GGTGGCCACCGTCTGTGTGCTCGCCTCTCTGCTGGGACCAGCGCCCATGG
GTGACATCAACTACGTGTACAATTCCACCCATGCAGCTATATACGCCGCC
TTTGCGCCGATCGCCTGGTGTTTGTTTTTCTCCTGGATCGTCTTTGTCTC
CCATAATGGATACACAAATAAACTGACGAAGCTGTTTGCCTGGCGCGGTT
TCCAGGTGTCCACGAAGCTATCGTATGCCATTTACCTGACGCAGTTCCCC
GTGTTCTTCTTTAATGTCGGCCGAAGGCGTCACATTCACCACTACTACAA
CTTTGTTTCGATAATTCTCGATACCAACGAATTCATATCGATCTTCCTGG
CCTCCGTGGCCCTGACGGTGCTCTTCGATGCACCGTTCCAGAATCTAAAG
AAGCTGCTGATCAAGCGACCCACGGCGGCAAAGGTGGTAAAGGATAGCAA
AGCCAAGGCGGCAGAGTCCCAGGATGCGACGACAACGACACTAGCCTCAC
AGCCCAGCAGCACTGCCCTCCTACAATCGCATCATCCGCACTCGGATTAG
AAGCTTTCTAGACCAT
BS23356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drd-RA | 2484 | CG33968-PA | 1..2484 | 17..2500 | 12420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drd-RA | 3280 | CG33968-RA | 281..2764 | 17..2500 | 12420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15126033..15126408 | 17..392 | 1880 | 100 | Plus |
| X | 23542271 | X | 15135523..15135887 | 1436..1800 | 1825 | 100 | Plus |
| X | 23542271 | X | 15135115..15135461 | 1092..1438 | 1735 | 100 | Plus |
| X | 23542271 | X | 15135959..15136275 | 1801..2117 | 1585 | 100 | Plus |
| X | 23542271 | X | 15134762..15135050 | 803..1091 | 1445 | 100 | Plus |
| X | 23542271 | X | 15133271..15133533 | 540..802 | 1315 | 100 | Plus |
| X | 23542271 | X | 15136562..15136795 | 2267..2500 | 1170 | 100 | Plus |
| X | 23542271 | X | 15136342..15136490 | 2118..2266 | 745 | 100 | Plus |
| X | 23542271 | X | 15131569..15131716 | 392..539 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:41:50 has no hits.
BS23356.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:11 Download gff for
BS23356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drd-RA | 279..2762 | 17..2500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:17 Download gff for
BS23356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drd-RA | 281..2764 | 17..2500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:28 Download gff for
BS23356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drd-RA | 281..2764 | 17..2500 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:28 Download gff for
BS23356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15131570..15131716 | 393..539 | 100 | -> | Plus |
| X | 15133271..15133533 | 540..802 | 100 | -> | Plus |
| X | 15134762..15135050 | 803..1091 | 100 | -> | Plus |
| X | 15135115..15135460 | 1092..1437 | 100 | -> | Plus |
| X | 15136342..15136490 | 2118..2266 | 100 | -> | Plus |
| X | 15135525..15135887 | 1438..1800 | 100 | -> | Plus |
| X | 15136562..15136795 | 2267..2500 | 100 | | Plus |
| X | 15126033..15126408 | 17..392 | 100 | -> | Plus |
| X | 15135959..15136275 | 1801..2117 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:17 Download gff for
BS23356.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15020066..15020441 | 17..392 | 100 | -> | Plus |
| arm_X | 15025603..15025749 | 393..539 | 100 | -> | Plus |
| arm_X | 15027304..15027566 | 540..802 | 100 | -> | Plus |
| arm_X | 15028795..15029083 | 803..1091 | 100 | -> | Plus |
| arm_X | 15029148..15029493 | 1092..1437 | 100 | -> | Plus |
| arm_X | 15029558..15029920 | 1438..1800 | 100 | -> | Plus |
| arm_X | 15029992..15030308 | 1801..2117 | 100 | -> | Plus |
| arm_X | 15030375..15030523 | 2118..2266 | 100 | -> | Plus |
| arm_X | 15030595..15030828 | 2267..2500 | 100 | | Plus |
BS23356.pep Sequence
Translation from 16 to 2499
> BS23356.pep
MSRMSHMLALLLVLIASSQALEGVVQPTCNLKDNCNLGDNLLAGTNSASD
AGDVSADKLESKIASIFEDKVNYSLKLFADDATTTILEYQTANLSQLHAV
TPGNYTIHQMEQAEDDDDQVEEDERAYLYNIGKRFLAITQPFDAARNPDA
STLCRRQMHQFLNALDNFDLWALKMHDSSGKLNSGILNGNINQPGDFDQC
LGIQQRMNQDQDAGQDQDGDSIIRGQYCLAYAQPVLPHNSKRLKSFFKLI
QSHGPFKSEFNDPGHRVPRYSLINWGLCVPSGCSARDVEYSVAEYLGNQT
ASTGITFNVRVEPQMCQVRDQRPWDRNTTWAVRFFLLVLSVAVLSTIYDR
STKSQPKQNPWFTAFSLDKNLRWLFSTSSAPGDIEAVHGIRFLNAIMLIF
SHKSMAMFFNPYNNRTAMSESLGQPWTVIGRAASLYTDPFLLFSGMLTSY
SLFGRLMKQQPIRLKNEYISRLMRIVPPLAALILFCTYVLPLWGSGPQWN
LVVGHHADICKKNWWRNLLFIHNYFGFSEMCLTHTHHLGIDTELFAVAPL
LILALWRWPRRGLFALLLLCTVGTAARYYTTIVNQLSNYIYFGTNIQRLF
RTADYMYSFPPHRSTVYIMGILLGYVLRKYQNARLSSLQLRLGWLVATVC
VLASLLGPAPMGDINYVYNSTHAAIYAAFAPIAWCLFFSWIVFVSHNGYT
NKLTKLFAWRGFQVSTKLSYAIYLTQFPVFFFNVGRRRHIHHYYNFVSII
LDTNEFISIFLASVALTVLFDAPFQNLKKLLIKRPTAAKVVKDSKAKAAE
SQDATTTTLASQPSSTALLQSHHPHSD*
BS23356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drd-PA | 827 | CG33968-PA | 1..827 | 1..827 | 4364 | 100 | Plus |
| CG3106-PB | 742 | CG3106-PB | 69..721 | 146..821 | 596 | 24.3 | Plus |
| CG3106-PA | 742 | CG3106-PA | 69..721 | 146..821 | 596 | 24.3 | Plus |
| CG14205-PA | 713 | CG14205-PA | 87..708 | 154..812 | 588 | 25.4 | Plus |
| CG14219-PA | 724 | CG14219-PA | 97..707 | 165..816 | 537 | 25.2 | Plus |
