BS23357.complete Sequence
1475 bp assembled on 2011-03-18
GenBank Submission: KX804460
> BS23357.complete
GAAGTTATCAGTCGACATGCCCTACAACGGCGCTAGTAATGGCAGTGGCG
CCAGTGGCGCCGGCGGAGGAGGGGCAACCATAGTCGTCACCGAGGGGCCG
CAAAACAAAAAGATCCGCACCGGAGTCCAGCAGCCCGGGGAGAACGATGT
GCACATGCATGCTAGGTCCACACCACAACAGAACCAGCAGCAAGCACTTA
TGAACAAGTCAAATGACGACCTACGGAGAAAGCGTCCCGAGACTACACGG
CCAAATCACATTCTTCTCTTCACCATCATAAATCCCTTCTATCCCATCAC
AGTTGATGTCTTGCACAAAATCTGTCATCCACATGGCCAAGTGCTTCGCA
TTGTCATATTCAAAAAGAATGGGGTCCAGGCCATGGTCGAGTTCGATAAT
CTGGATGCGGCCACTAGGGCTCGCGAGAATCTGAATGGAGCCGACATTTA
TGCCGGATGCTGCACTCTGAAAATCGATTATGCCAAGCCGGAGAAATTGA
ACGTGTACAAGAATGAGCCCGATACCAGCTGGGACTATACGCTGAGCACA
GGTGAGATTCTACCAAAACCACCGCTATTGGGACCCGGAGCCGCTTTCCC
ACCATTCGGAGCTCCCGAATATCACACCACCACACCGGAGAACTGGAAGG
GGGCCGCCATCCATCCCACTGGCCTGATGAAGGAGCCCGCTGGTGTTGTG
CCCGGACGCAATGCTCCGGTGGCCTTCACACCGCAAGGACAGGCTCAGGG
CGCCGTCATGATGGTCTACGGCCTGGACCACGACACTTCCAACACGGATA
AGCTCTTCAATTTGGTTTGCCTGTACGGCAACGTGGCACGGATCAAGTTC
TTGAAGACCAAAGAGGGCACCGCCATGGTGCAAATGGGAGACGCTGTGGC
CGTTGAGCGTTGCGTGCAGCACTTGAACAACATTCCCGTGGGCACTGGTG
GCAAGATACAGATCGCTTTCTCCAAACAGAACTTCCTATCCGAGGTGATC
AACCCGTTCTTGCTGCCCGATCATTCGCCCAGCTTCAAGGAGTACACCGG
CTCCAAGAACAATCGTTTCCTATCGCCGGCCCAGGCGAGCAAGAATCGCA
TTCAACCACCGAGCAAGATTTTGCACTTTTTCAACACACCGCCCGGCTTG
ACCGAGGACCAACTGATTGGAATCTTTAACATCAAGGATGTGCCCGCCAC
ATCGGTGCGCCTGTTCCCCTTGAAGACCGAGCGCTCGTCGTCGGGACTGA
TCGAATTTTCCAATATCTCGCAGGCAGTGCTGGCTATCATGAAGTGCAAC
CATCTGCCTATTGAGGGTAAAGGCACCAAGTTCCCATTCATCATGAAGCT
GTGCTTTTCCTCATCCAAGAGCATGAACGGCGCCTGGAACAATGCGGCCA
GCGAGGGCATGATCGAGAAGGAGAACGAGGTGGATACCAAGGTGGACATC
TACAATTGAAAGCTTTCTAGACCAT
BS23357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RH | 1443 | CG9218-PH | 1..1443 | 17..1459 | 7215 | 100 | Plus |
| sm-RP | 1305 | CG9218-PP | 151..1305 | 305..1459 | 5775 | 100 | Plus |
| sm-RAC | 906 | CG9218-PAC | 14..906 | 567..1459 | 4465 | 100 | Plus |
| sm-RP | 1305 | CG9218-PP | 1..150 | 17..166 | 750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RH | 3010 | CG9218-RH | 913..2355 | 17..1459 | 7215 | 100 | Plus |
| sm-RP | 2872 | CG9218-RP | 1063..2217 | 305..1459 | 5775 | 100 | Plus |
| sm-RY | 1251 | CG9218-RY | 91..984 | 566..1459 | 4470 | 100 | Plus |
| sm-RP | 2872 | CG9218-RP | 913..1062 | 17..166 | 750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19532436..19532712 | 1117..841 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 19532169..19532376 | 1323..1116 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 19538029..19538211 | 749..567 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 19574144..19574326 | 487..305 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 19628481..19628630 | 166..17 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 19600881..19601020 | 305..166 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 19530564..19530702 | 1459..1321 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 19537776..19537872 | 841..745 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 19573988..19574068 | 566..486 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:34:30 has no hits.
BS23357.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 10:12:01 Download gff for
BS23357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RH | 906..2347 | 17..1458 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:41 Download gff for
BS23357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RH | 913..2354 | 17..1458 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:51 Download gff for
BS23357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RH | 913..2354 | 17..1458 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:51 Download gff for
BS23357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19530565..19530700 | 1323..1458 | 100 | <- | Minus |
| 2R | 19532170..19532374 | 1118..1322 | 100 | <- | Minus |
| 2R | 19532436..19532711 | 842..1117 | 100 | <- | Minus |
| 2R | 19537776..19537868 | 749..841 | 100 | <- | Minus |
| 2R | 19538030..19538211 | 567..748 | 100 | <- | Minus |
| 2R | 19573988..19574066 | 488..566 | 100 | <- | Minus |
| 2R | 19574144..19574326 | 305..487 | 100 | <- | Minus |
| 2R | 19600882..19601019 | 167..304 | 100 | <- | Minus |
| 2R | 19628481..19628630 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:41 Download gff for
BS23357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15488387..15488524 | 167..304 | 100 | <- | Minus |
| arm_2R | 15515986..15516135 | 17..166 | 100 | | Minus |
| arm_2R | 15418070..15418205 | 1323..1458 | 100 | <- | Minus |
| arm_2R | 15419675..15419879 | 1118..1322 | 100 | <- | Minus |
| arm_2R | 15419941..15420216 | 842..1117 | 100 | <- | Minus |
| arm_2R | 15425281..15425373 | 749..841 | 100 | <- | Minus |
| arm_2R | 15425535..15425716 | 567..748 | 100 | <- | Minus |
| arm_2R | 15461493..15461571 | 488..566 | 100 | <- | Minus |
| arm_2R | 15461649..15461831 | 305..487 | 100 | <- | Minus |
BS23357.pep Sequence
Translation from 16 to 1458
> BS23357.pep
MPYNGASNGSGASGAGGGGATIVVTEGPQNKKIRTGVQQPGENDVHMHAR
STPQQNQQQALMNKSNDDLRRKRPETTRPNHILLFTIINPFYPITVDVLH
KICHPHGQVLRIVIFKKNGVQAMVEFDNLDAATRARENLNGADIYAGCCT
LKIDYAKPEKLNVYKNEPDTSWDYTLSTGEILPKPPLLGPGAAFPPFGAP
EYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMV
YGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCV
QHLNNIPVGTGGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNR
FLSPAQASKNRIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLF
PLKTERSSSGLIEFSNISQAVLAIMKCNHLPIEGKGTKFPFIMKLCFSSS
KSMNGAWNNAASEGMIEKENEVDTKVDIYN*
BS23357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-PH | 480 | CG9218-PH | 1..480 | 1..480 | 2542 | 100 | Plus |
| sm-PM | 497 | CG9218-PM | 1..497 | 1..480 | 2510 | 96.4 | Plus |
| sm-PZ | 491 | CG9218-PZ | 1..491 | 1..480 | 2498 | 96.9 | Plus |
| sm-PE | 475 | CG9218-PE | 1..475 | 1..480 | 2496 | 98.8 | Plus |
| sm-PA | 475 | CG9218-PA | 1..475 | 1..480 | 2496 | 98.8 | Plus |
