BS23360.complete Sequence
3500 bp assembled on 2011-02-18
GenBank Submission: KX803670
> BS23360.complete
GAAGTTATCAGTCGACATGCCGCCATCCCTGATTGCCGTGTCCGAGTTTG
TGGAGGAGACGCGCTCCGATTACAGCTCGCCCACCACCTCCACCTTCGCC
TCGAGGATGCCCGACTGCCGCCACACGATTGGCGTCTTGGAAGAGAGATT
GGAGTTCGACCGGGAGGGTCTAACTAAGCTGAAAAAAGCGGTCAAGGCTA
TCCACAACTCAGGAAACACCCATGTGGACAATGAGATGTTTATGGTGCGA
GCTCTGGAGCGACTGGGCGGCAAGGTTATTGAGCAGGATGAGCCGGACAT
CGGCGCCGCGTTCCTTAAGTTCAGCGTTGTCACCAAGGAGCTTAGCGCGC
TGATGAAGACCCTGATGCAAAACATCAACAACATTGTGATGTTTCCGGTG
GACTCAATGCTGAAGAGCGAGCTGCGGGGCGTGAAGGGGGACATGAAGCG
GCCATTCGACAAGGCGGCCAAGGACTACGAGGCAAAGTTCATCAAGATTG
AGAAGGAGAAGAAAGCCCAGGCCAAAGAGGCGGGTATGGTGCGCACAGAG
ATCGACGCCGCTGTGGTGGCCGAAGAAATGGAGAAGGAGCGTCGACTCTA
CCAACTGCAGACCTGCGAGTATTTGCTGAAGTACAAAGACATTAAGACCA
AGACGGGAATCGAGCTGTTGCAGCACCTTATTGAGTATTATCACGCGTTA
AGCAACTACTTTAAGGACGGCCTACAGACGATCGAGCACTTCGGCACATA
CATCGGCGACCTCAGCGAGAAGCTGCATGAGATCAAGCAGAAGCAAGACG
AGGATCGTCGCAGTTTGCTGGATCTGCGAACAGTTCTGCGCAGCACTCCA
GATTTTGAGCGAGTTGACAATGTGCCATCGTCGGAGAGCCGAAGTGGGGG
AGCTGGTTACTCCCTCCACCAGTTGCAAGGTGACAAACACCACGGCGTCA
CCCGGCAAGGCCACCTTCTCAAGAAGAGCGAGGGCAAGGTGCGTCGCGTT
TGGCAGAAACGACGATGCCGGGTCACCAGCGATGGTTTTCTTGACATCTT
CCATGCCGACGAGTCGAAGCCGCCAACACGCGTAAATCTGCTCACCTGCC
AGATCAAACCGGTGCCGGATGACAAGCGCGGGTTTGATCTTATCAGCTAC
AATCGTCCGTATCACTTTCAGGCGGAGGATGAAGGCGATCAGAAGGCATG
GATGGCCGTCCTGGTGAACTGCAAGGAGAAGGCACTTACCAAGGCCTTCC
AGCACGCCAATCCGCAGATGAGTCCAAGTCTGGTGGAGCTGCAAAAGACT
GTGATCCGATATGTACAGCTACTGCCGGGCAACGATCGATGCTGTGACTG
TGGATCGCGTAACGATGTGACCTGGATCAGTTTAAACTTTGGCATTCTAG
TGTGCATTCAGTGCTCTGGGGTTCATCGCGATCTGGGCGTCCACCACTCG
CGCATCCAGAGTCTTACGCTAGACAACCTGACGACGGCTAATCTGCTTAT
TGCTCGTGCCATGGGCAACAGCACGCTGAACGACATTATGGAGGCGAAGC
TGGGAAGGGGCAAGCTTCAGCACGAGAGCAGCATGGAAGAGCGTTACGAT
TTTATCCGCGCCAAGTATGTTGCCAAGCGCTATGTCATGCGCACGTGCTC
GGATGACAACGACTTACGGTGCGACTTAGAGCAGGCTGTGGTCAACGCCG
ACATGAGTCAGTTGCTCCAGGTGTGGGCGGAAGGAGCGGATCTCACTTGC
TGTCTGCCCAGCTCTGATGCCGGAGAGACGGCCCTCCATCTGGCCGTGCT
GCGCGAGATGGGATCTACGCTGCACATAGTCGACTTTCTCATCCAAAATA
TGCCGCCTAAAGGTCTTAACAAAGCTACCAATCCGGCCGGTCTGTTGGAT
GTGACGGGAAAGAATACGGCGTTGCATTTGTGCGCTCTGCACGATCGGAG
GGAGTGCATGAAGCTGCTGCTCCGCTCTGGAGCCGACTATGAGCTCAAGA
ACTCACAGAACAAAACAGCTCTGGATATTGCCAAAGAAATGGGACACAAT
AGCTGCAGGGAGCTTATTGAATGTGCCATTAAGCGGGAGAAGAGCGCCTT
CGACCACATCAACACTGACTGGAATCTGCCAAACGAGGACGGTTCCACGG
ATTTCAGCGACGATGAAACAGTCATCGATGAGCGCAAATCCCGTTCGCGT
CCCCCCAGTTTTGCTGGCGGGGACTCACCTGTTCTGCGCTCTCGTTCCTC
TACTTGCGACTCCATACAGTCCAGTTCTAGTCCAATCGCCAATTGTCCGA
GTCGGCAATTCACTCTACCCTCCGGTCTGCCGAGCTATACGCATTCTGCA
GGGACTTCGCCCAAACAGCACATAAGCGTGGGACAGTATCTGGGCAGTGC
TACCAATGTTGGAGGCAATGGACCCGGGAATGGTGGTTCAAGTCCCAGTT
CCGCCTCCAGCCAGAGCGTTCGCGCGGCGCGAAACAGCTTGAATATGCAA
AGCGATCTGGGCGGGCATGTGACAGGTGCTCGGAAATCAACATCTACGGC
CAACATGAATTCTCTGAAGAAGCGTACAGCCCCAGCACCACCCCCCGGGA
CATTGGGCAGCGCTTCGTCCAGCTCTTTTTACGGAACTTTGCCTCATCCT
CCAAGGCATTCGCAAAACTTCGATGCCAGCGACATTCGAGCCATTAACCA
CAAGAACCAGTCGCTGGACGTGGCTTATGGCACGTTGCCGCACCTTCGGA
GCGTAGAAAGCAGTCCCAGGGGCGGAGGAGGATATGGGTATGGAGTGTCC
CAGGATCCAGGAGGATCTGGAAACGGGAGCAACAACAGTCTAATGCCTGC
CATGACAACCTTCGGCCACAAGCGTTCACCCAGCGGTGAGTCATTGAACA
GGAATATTCATTTAGCGGGCGCCAAGCTTGTTCTGCCGCCCACCGGTGAG
TTGCCCACGCTGAAGCATGTGGACAAATCGGCGTTAACCAGGCCAAAGAT
TCCTCCACCAGGACCGCCATCAGAGCGCGAAATATCAAACGGACAGTCGA
ACGAGAGCATCAGTTCCATGGACGAGGGACCAGTGGCGCCTCCCCGTAAG
CTGGTTAATCAGTCGGCCAATTTTCCCGACTACGAGTCCTGGCATACGGA
TATGGACAGCTCTGGTGGCGGTCTAGATCACTCAGCCGAGTCGAATGTGT
CCTCGAGCGACAACGATCGCCTTAACTCATCGCCGGACAATCCGTCGAAA
ACCGGTGGGGCAGGTCTGGGCGGAAAGTTCCACTATAATGGTCAGCGTCG
GTGCCGAGCTCTCTACGATTGCGTGGCGGACAACGATGATGAGCTGGAGT
TCAAGGAAGGCGAGATTTTGATCGTGCTGAACGAGCGCACCGACGACGAG
AACTGGATGGAGGGCATTATTGAGGGACAGCCGACGAGGAAGGGCATGTT
TCCCGTCAGTTTCGTGCATATGCTGCCTGATTAAAAGCTTTCTAGACCAT
BS23360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Asap-RB | 3468 | CG30372-PB | 1..3468 | 17..3484 | 17340 | 100 | Plus |
| Asap-RD | 3432 | CG30372-PD | 1..2169 | 17..2185 | 10845 | 100 | Plus |
| Asap-RC | 3384 | CG30372-PC | 1..2169 | 17..2185 | 10845 | 100 | Plus |
| Asap-RD | 3432 | CG30372-PD | 2170..3001 | 2270..3101 | 4160 | 100 | Plus |
| Asap-RD | 3432 | CG30372-PD | 3048..3432 | 3100..3484 | 1925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Asap-RB | 4210 | CG30372-RB | 617..4084 | 17..3484 | 17340 | 100 | Plus |
| Asap-RD | 5028 | CG30372-RD | 617..2785 | 17..2185 | 10845 | 100 | Plus |
| Asap-RC | 4980 | CG30372-RC | 617..2785 | 17..2185 | 10845 | 100 | Plus |
| Asap-RD | 5028 | CG30372-RD | 2786..3617 | 2270..3101 | 4160 | 100 | Plus |
| Asap-RD | 5028 | CG30372-RD | 3664..4048 | 3100..3484 | 1925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8116267..8117104 | 3023..2186 | 4190 | 100 | Minus |
| 2R | 25286936 | 2R | 8117345..8117829 | 2065..1581 | 2410 | 99.8 | Minus |
| 2R | 25286936 | 2R | 8118409..8118855 | 1148..702 | 2220 | 99.8 | Minus |
| 2R | 25286936 | 2R | 8117887..8118323 | 1585..1149 | 2185 | 100 | Minus |
| 2R | 25286936 | 2R | 8118914..8119255 | 705..364 | 1710 | 100 | Minus |
| 2R | 25286936 | 2R | 8115266..8115463 | 3484..3287 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 8115530..8115717 | 3286..3099 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 8119323..8119468 | 364..219 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 8122257..8122385 | 145..17 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 8117165..8117284 | 2185..2066 | 600 | 100 | Minus |
| 2R | 25286936 | 2R | 8116132..8116211 | 3100..3021 | 400 | 100 | Minus |
| 2R | 25286936 | 2R | 8119548..8119622 | 218..144 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:39:03 has no hits.
BS23360.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:59 Download gff for
BS23360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30372-RB | 468..3933 | 17..3482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:18 Download gff for
BS23360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asap1-RB | 617..4082 | 17..3482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:13 Download gff for
BS23360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asap-RB | 617..4082 | 17..3482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:13 Download gff for
BS23360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8122257..8122385 | 17..145 | 100 | | Minus |
| 2R | 8117165..8117284 | 2066..2185 | 100 | <- | Minus |
| 2R | 8116267..8117104 | 2186..3023 | 100 | <- | Minus |
| 2R | 8115268..8115463 | 3287..3482 | 100 | <- | Minus |
| 2R | 8115530..8115715 | 3101..3286 | 100 | <- | Minus |
| 2R | 8116132..8116208 | 3024..3100 | 100 | <- | Minus |
| 2R | 8117345..8117825 | 1585..2065 | 100 | <- | Minus |
| 2R | 8117888..8118323 | 1149..1584 | 100 | <- | Minus |
| 2R | 8118409..8118851 | 706..1148 | 100 | <- | Minus |
| 2R | 8118914..8119254 | 365..705 | 100 | <- | Minus |
| 2R | 8119323..8119468 | 219..364 | 100 | <- | Minus |
| 2R | 8119548..8119620 | 146..218 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:18 Download gff for
BS23360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4004850..4005330 | 1585..2065 | 100 | <- | Minus |
| arm_2R | 4002773..4002968 | 3287..3482 | 100 | <- | Minus |
| arm_2R | 4003035..4003220 | 3101..3286 | 100 | <- | Minus |
| arm_2R | 4003637..4003713 | 3024..3100 | 100 | <- | Minus |
| arm_2R | 4003772..4004609 | 2186..3023 | 100 | <- | Minus |
| arm_2R | 4004670..4004789 | 2066..2185 | 100 | <- | Minus |
| arm_2R | 4005393..4005828 | 1149..1584 | 100 | <- | Minus |
| arm_2R | 4005914..4006356 | 706..1148 | 100 | <- | Minus |
| arm_2R | 4006419..4006759 | 365..705 | 100 | <- | Minus |
| arm_2R | 4006828..4006973 | 219..364 | 100 | <- | Minus |
| arm_2R | 4007053..4007125 | 146..218 | 100 | <- | Minus |
| arm_2R | 4009762..4009890 | 17..145 | 100 | | Minus |
BS23360.pep Sequence
Translation from 16 to 3483
> BS23360.pep
MPPSLIAVSEFVEETRSDYSSPTTSTFASRMPDCRHTIGVLEERLEFDRE
GLTKLKKAVKAIHNSGNTHVDNEMFMVRALERLGGKVIEQDEPDIGAAFL
KFSVVTKELSALMKTLMQNINNIVMFPVDSMLKSELRGVKGDMKRPFDKA
AKDYEAKFIKIEKEKKAQAKEAGMVRTEIDAAVVAEEMEKERRLYQLQTC
EYLLKYKDIKTKTGIELLQHLIEYYHALSNYFKDGLQTIEHFGTYIGDLS
EKLHEIKQKQDEDRRSLLDLRTVLRSTPDFERVDNVPSSESRSGGAGYSL
HQLQGDKHHGVTRQGHLLKKSEGKVRRVWQKRRCRVTSDGFLDIFHADES
KPPTRVNLLTCQIKPVPDDKRGFDLISYNRPYHFQAEDEGDQKAWMAVLV
NCKEKALTKAFQHANPQMSPSLVELQKTVIRYVQLLPGNDRCCDCGSRND
VTWISLNFGILVCIQCSGVHRDLGVHHSRIQSLTLDNLTTANLLIARAMG
NSTLNDIMEAKLGRGKLQHESSMEERYDFIRAKYVAKRYVMRTCSDDNDL
RCDLEQAVVNADMSQLLQVWAEGADLTCCLPSSDAGETALHLAVLREMGS
TLHIVDFLIQNMPPKGLNKATNPAGLLDVTGKNTALHLCALHDRRECMKL
LLRSGADYELKNSQNKTALDIAKEMGHNSCRELIECAIKREKSAFDHINT
DWNLPNEDGSTDFSDDETVIDERKSRSRPPSFAGGDSPVLRSRSSTCDSI
QSSSSPIANCPSRQFTLPSGLPSYTHSAGTSPKQHISVGQYLGSATNVGG
NGPGNGGSSPSSASSQSVRAARNSLNMQSDLGGHVTGARKSTSTANMNSL
KKRTAPAPPPGTLGSASSSSFYGTLPHPPRHSQNFDASDIRAINHKNQSL
DVAYGTLPHLRSVESSPRGGGGYGYGVSQDPGGSGNGSNNSLMPAMTTFG
HKRSPSGESLNRNIHLAGAKLVLPPTGELPTLKHVDKSALTRPKIPPPGP
PSEREISNGQSNESISSMDEGPVAPPRKLVNQSANFPDYESWHTDMDSSG
GGLDHSAESNVSSSDNDRLNSSPDNPSKTGGAGLGGKFHYNGQRRCRALY
DCVADNDDELEFKEGEILIVLNERTDDENWMEGIIEGQPTRKGMFPVSFV
HMLPD*
BS23360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Asap-PB | 1155 | CG30372-PB | 1..1155 | 1..1155 | 6052 | 100 | Plus |
| Asap-PC | 1127 | CG30372-PC | 1..1127 | 1..1155 | 5870 | 97.6 | Plus |
| Asap-PD | 1143 | CG30372-PD | 1..1143 | 1..1155 | 5843 | 96.2 | Plus |
| CenB1A-PA | 828 | CG6742-PA | 15..497 | 32..540 | 340 | 24 | Plus |
| CenB1A-PB | 598 | CG6742-PB | 74..267 | 357..540 | 272 | 34.9 | Plus |
