BS23361.complete Sequence
788 bp assembled on 2011-01-25
GenBank Submission: KX805195
> BS23361.complete
GAAGTTATCAGTCGACATGAGTCTCAGCAACAAGGTGGTGATCGTGACGG
GAGCTAGCAGCGGAATTGGTGCCGCCATCGCCCAAGTTCTTGCTCGCGAA
GGTGCCACTTTGGCGCTGGTGGGTCGCAATGTGGCCAATCTGGAGGCCAC
GAAGAAGAGCCTGAAGGGCACGCAGGCAGAAATCGTGGTGGCCGATGTGA
CCAAGGATGCGGACGCGATTGTCCAGCAAACGTTGGCCAAGTTCGGACGC
ATCGACGTGCTTGTCAACAATGCCGGCATTCTGGGCAAGGGTGGCCTCAT
CGATCTGGACATCGAGGAATTCGACGCGGTGCTCAATACCAATCTGCGTG
GTGTCATTCTGTTGACCAAGGCGGTGCTCCCGCACCTCCTGAAGACCAAG
GGAGCCGTGGTCAACGTGAGCAGCTGTGCCGGCATTCGTCCCTTCGCCGG
AGCACTGAGCTATGGAGTTTCGAAGGCCGCCCTCGATCAGTTCACCAAGA
TTGTGGCCCTCGAAATGGCGCCTCAGGGTGTGCGCGTGAACTCGGTGAAT
CCCGGCTTCGTGGTGACCAACATCCATCGGAACATTGGCATCGTCGACGA
GGAGTACAACGGAATGCTCCAGCGGGCCATCAATTCGCATCCCATGGGCC
GTGTAGGCGACGTCACCGAAGTGGCCGAGGCAGTGGCCTTTTTGGCCAGC
TCCAAGGCAAGTTTCACCACCGGCGCCCTCTTCCCCATCGATGGTGGCAA
GCACAATCTGACGCCTCGTTAAAAGCTTTCTAGACCAT
BS23361.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3699-RA | 756 | CG3699-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
| CG12171-RA | 774 | CG12171-PA | 469..558 | 467..556 | 180 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3699-RA | 839 | CG3699-RA | 17..772 | 17..772 | 3780 | 100 | Plus |
| CG12171-RA | 1014 | CG12171-RA | 534..623 | 467..556 | 180 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 946729..947484 | 772..17 | 3780 | 100 | Minus |
| 3R | 32079331 | 3R | 5634160..5634249 | 467..556 | 180 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:32:21 has no hits.
BS23361.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:54 Download gff for
BS23361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3699-RA | 1..754 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:25 Download gff for
BS23361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3699-RA | 17..770 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:41 Download gff for
BS23361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3699-RA | 17..770 | 17..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:41 Download gff for
BS23361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 946731..947484 | 17..770 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:25 Download gff for
BS23361.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 840764..841517 | 17..770 | 100 | | Minus |
BS23361.pep Sequence
Translation from 16 to 771
> BS23361.pep
MSLSNKVVIVTGASSGIGAAIAQVLAREGATLALVGRNVANLEATKKSLK
GTQAEIVVADVTKDADAIVQQTLAKFGRIDVLVNNAGILGKGGLIDLDIE
EFDAVLNTNLRGVILLTKAVLPHLLKTKGAVVNVSSCAGIRPFAGALSYG
VSKAALDQFTKIVALEMAPQGVRVNSVNPGFVVTNIHRNIGIVDEEYNGM
LQRAINSHPMGRVGDVTEVAEAVAFLASSKASFTTGALFPIDGGKHNLTP
R*
BS23361.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3699-PA | 251 | CG3699-PA | 1..251 | 1..251 | 1230 | 100 | Plus |
| CG12171-PA | 257 | CG12171-PA | 3..257 | 2..251 | 651 | 53.7 | Plus |
| CG31549-PB | 257 | CG31549-PB | 3..257 | 2..251 | 642 | 53.3 | Plus |
| CG31549-PA | 257 | CG31549-PA | 3..257 | 2..251 | 642 | 53.3 | Plus |
| CG31548-PA | 256 | CG31548-PA | 1..256 | 1..251 | 636 | 51.6 | Plus |
