BS23362.complete Sequence
1250 bp assembled on 2011-01-25
GenBank Submission: KX800979
> BS23362.complete
GAAGTTATCAGTCGACATGTTCAGACTAAGCTATCGACTGCCCGCTGCCC
TCGGCGGTCTGCGCCACGCCTCCTCCGCCGCCGGCGAGGGTCAGCGCACC
GCCCTCTACGATTTCCACGTGCAGAAAGGCGGAAAGATCGTGAACTTCGG
AGGCTATGCTCTGCCGGTTCAGTATTCGGATCAGAGCATTATAGCCTCCC
ACCTGCACACCCGTCAGGTGGGCTCCATTTTCGACGTGTCGCACATGCTG
CAATCCCGGATTTTCGGCAAGGATGCGGCCGCCTGTCTGGAGTCGGTTTG
CACTGCGGACATTCTGGGCACGCCGGAGGGCAGTGGTAGCCTCACCGTCT
TCACCAACGAGGCGGGCGGTATCCTGGACGATCTCATCGTGAACAAAGTC
AGCGAAAAGGAGCTATATGTGGTCTCCAATGCGGCGATGAAAGAACAGGA
CATGGGCATAATGAAGACAGCTGTGGATAATTTTAAGTCCCAGGGAAAAG
ACGTATCCATTGAATTCCTCACACCCGCCGATCAATCTCTAGTAGCCGTC
CAGGGTCCTCAAGTGGCCAAGGAACTATCGAAACTACTTACCGGGAAAGC
TTCTCTCGATCAACTCTACTTCATGAGTTCCTTCGTCACCACATTGGCTG
GAATCCCCAATGTCAGGATCACGAGATGTGGTTACACCGGTGAGGACGGT
GTGGAGATATCGGTGGCATCCAGCCAGGCACAGAAGCTCACTGAATCTCT
TCTTGAGAGTGGAGTCCTCAAGCTTGCTGGTCTGGGAGCCAGAGACTCCC
TGCGATTGGAGGCGGGTCTCTGCTTGTATGGCAGTGATATCGATTCTAAG
ACGACACCCGTGGAGGCGGCTCTTGCCTGGTTGGTAACCAAAAGACGCCG
CACAACCCGCGATTTTCCAGGAGCTGACGTGATCCTTGGCCAGCTGAAGG
AGGGCGTCAGCCGGAGGCGAGTGGGTCTCCAGATGTTGGGCACCAAGCCA
CCGCCAGCTCGTTCCGGAGTGGCCATCTTTAGTCAGGGTCAGCAGGTGGG
TCAGGTGACTAGTGGCTGCCCAAGTCCCAGTGCTGGACGCAACATTGCTA
TGGGATATGTGGCAGAGAATCTAAAAGCACCCGGCACAAAGGTGGAGTTC
AAGGTTCGAGACAAGCTCTACGAGGCTGAAGTCACTAAAATGCCATTTGT
AAAAGCTAACTATTATAACAGACCGAAGAAATAAAAGCTTTCTAGACCAT
BS23362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6415-RA | 1218 | CG6415-PA | 1..1218 | 17..1234 | 6075 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6415-RA | 1254 | CG6415-RA | 14..1232 | 17..1235 | 6080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10704148..10704908 | 475..1235 | 3790 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10703634..10704093 | 17..476 | 2300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:32:26 has no hits.
BS23362.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:55 Download gff for
BS23362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6415-RA | 19..1221 | 22..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:27 Download gff for
BS23362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6415-RA | 19..1221 | 22..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:43 Download gff for
BS23362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6415-RA | 19..1221 | 22..1225 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:43 Download gff for
BS23362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10703639..10704092 | 22..475 | 100 | -> | Plus |
| 2L | 10704149..10704897 | 476..1225 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:27 Download gff for
BS23362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10703639..10704092 | 22..475 | 100 | -> | Plus |
| arm_2L | 10704149..10704897 | 476..1225 | 99 | | Plus |
BS23362.pep Sequence
Translation from 16 to 1233
> BS23362.pep
MFRLSYRLPAALGGLRHASSAAGEGQRTALYDFHVQKGGKIVNFGGYALP
VQYSDQSIIASHLHTRQVGSIFDVSHMLQSRIFGKDAAACLESVCTADIL
GTPEGSGSLTVFTNEAGGILDDLIVNKVSEKELYVVSNAAMKEQDMGIMK
TAVDNFKSQGKDVSIEFLTPADQSLVAVQGPQVAKELSKLLTGKASLDQL
YFMSSFVTTLAGIPNVRITRCGYTGEDGVEISVASSQAQKLTESLLESGV
LKLAGLGARDSLRLEAGLCLYGSDIDSKTTPVEAALAWLVTKRRRTTRDF
PGADVILGQLKEGVSRRRVGLQMLGTKPPPARSGVAIFSQGQQVGQVTSG
CPSPSAGRNIAMGYVAENLKAPGTKVEFKVRDKLYEAEVTKMPFVKANYY
NRPKK*
BS23362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6415-PA | 405 | CG6415-PA | 1..405 | 1..405 | 2041 | 100 | Plus |
| Sardh-PA | 894 | CG6385-PA | 532..839 | 63..366 | 189 | 24.8 | Plus |
| CG3626-PA | 939 | CG3626-PA | 571..897 | 84..405 | 156 | 24 | Plus |
