BS23367.complete Sequence
2204 bp assembled on 2011-02-18
GenBank Submission: KX800859
> BS23367.complete
GAAGTTATCAGTCGACATGACGGACGTGCCGGAGCCCGTGCGCAAGTGCG
CCAGCCTGTTGAAGGGCACGAAGAGCGACACTGAAAAATTCGCCGCCCTC
TTTATGGTCACCAAGCTGGTCAAGGGCAAGGACTGCAATGCGGCGGGCAA
GAAGCTGCTGTTCGAGGCCATAGGGTTTCCCTTCCTCAAGAAGCTGCTAG
TGTCCAAGGATCTGCCCAACGATTGTCCGCCGTTAGTTTACAAGAGTGTA
GCTCTCTCGATCCTCACGTGCTTTTGCCAGGAGGAGGAGTTAGCCACCCA
TAAGGACATCATCGACGCCATACCCACGCTCCTGGAAATCGTTGAGCAGG
CCGATGACGAGGACTACGAGGATAACCTAATCGTGGTCAGCGAGGCGTAT
AGTTGCCTCAAGAGCATCGCCAGCCATGAGCCAGGCCAGCAGGCCCTTCT
GGCCACCGGAGCCATCCCCAAGATGTCGCAGATATACTCCGCCCAGAGTT
TCCAGACCGATGAGGCCTTGCACCTGATCGTGCTGCTTGTTAAGCAGTTT
GGAGTGGTATCATGGCCCGAGGATCCCACTGCCTTCCATGCTCTGATCCA
GAGGATCGCTTTGGACATGGAAACCGATGACACGGAGAGAAAGTACGAGC
TCTGCCGTATCTTGGCTGATATCCTTATTACCTGCCGTCGTGAGATTGTG
ATTAATTCTCTGGAGGGTCAGATCTGGCCGGAGAGCTTGTTCAAGGGCTG
TGGAGATATTCTGAAGGCCAAGATTGGCCCCAAGCAAAGGGATCCTGCAC
TGCATCTAATAGCCACCACCTTGCATGTGCTGGGCATCCAATGGGCCTTC
ATGGACGAGCAGAAGACTTTCTTCCTGCAGCTCCTCCAACTGGGAGCTAT
CGAGGTGCGCATGCAAATGGATGAGAAAAAACTGGAAACCACCTTCAAGC
AGGCGGAGCTGCTCACCTGCTGCTTCTCCATTCTGGAGCATTGCATTGAG
TATATGGCTACGGATCAGCTGGATCTAGAGCCCAAGGAGAAACAGACCAC
TTACACCGCTCTCAAGGGCGCCTTCAACCAGGTTCTGGCGGTTTTGACCC
GTGTTAGCCAGGACAAGATCAGGGAAAGCTCTAATCCCAAAGATAAGAAG
TTTGTGTTTGCCATCGTGAAAGTTCTGTCCGCCTGGCTAGCCCAGGAGAC
AACGGCCATGAGACCGGCCATCTACAAGCTTCTGCCCTTCATGCTCAAGG
TGGCCAACGAGAGTTTCCAGGAGCTAAAGACCTGGAGGGCAGGAACTAGG
GAGGGCGAACCACCCATCGATGTTCTGCGGATCATGCTTCCGGCTCTCTG
CCATTTCGCAGTGGAGGAGGAGGCCAGGAGAGTGCTCTTCACCCATAAGC
AGGATGAAGTGCTGCTGGAATCCTTGGAGTTCTACTTCAGCATTGCCCAT
TGGAAGAGGCCGCCAATACCGCGCGCTGAGCGTTTGAAGCGCATGAATGA
GCCCGATCCGGTTCCGACTCCGGAGCAGCAGGCGGAGATGAAGGTGGCCA
GAAGTGCCATAGTGGCGCTCTGCAACATTTTGATGAACTTCACCGTCTTG
GAGCCGAAGAAGGCTGAGGATGGACCGACTTTCGCCAATCTGCTGAAGTT
CGTGGTGGAGAATCTACCCGAACTGAAGGATACGCCCGATAACCTGGTCA
TCCACGGAAACCTGGCTGTGCTGGGCCTTCTACTGCTTAAGCAGCAGTCC
AAGAAGGTGAAGCAGAATGACTTCTCCATCTGTCGCTACATCCAGGCCAC
CATCCGCTTCCTCTGGGATGCCTACAACATCGATGAGAGCAACGATCCCA
CCGCTCTGGTGGTGTCCATTGCCTACAAGGGCTACTGGTCGGATCTGTCG
GAGCTCTGGTTCCTGGGAATGCAGACCATGTGCGGCGTGCTACCCCTGGT
GCCATGGCTCTCCGAGTTCGCCCTGGAGTCCGGCTGGGCAGAGGGCATTG
TGAAGACCCTGAAAAAGGTCAAGATCGGCACCCTGCCGGCTAACGTTAAA
TCCGCGTACGAGGACTTCCTGTCCCAACTGGTGGACGTGAACGGCGATGT
CCAGGCCGTGCTCAAGAAGGCCGATGCTCTGCGGGTCTGCCGCAATCACA
GGATGATGGATCTGGGCAAGAAGCTCTTCGGCGACTAAAAGCTTTCTAGA
CCAT
BS23367.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neurochondrin-RA | 2172 | CG2330-PA | 1..2172 | 17..2188 | 10860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neurochondrin-RA | 2580 | CG2330-RA | 237..2408 | 17..2188 | 10860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6468673..6470844 | 17..2188 | 10860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:42:09 has no hits.
BS23367.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:12 Download gff for
BS23367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neurochondrin-RA | 262..2431 | 17..2186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:23 Download gff for
BS23367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neurochondrin-RA | 237..2406 | 17..2186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:37 Download gff for
BS23367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neurochondrin-RA | 237..2406 | 17..2186 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:37 Download gff for
BS23367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6468673..6470842 | 17..2186 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:23 Download gff for
BS23367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2294395..2296564 | 17..2186 | 100 | | Plus |
BS23367.pep Sequence
Translation from 16 to 2187
> BS23367.pep
MTDVPEPVRKCASLLKGTKSDTEKFAALFMVTKLVKGKDCNAAGKKLLFE
AIGFPFLKKLLVSKDLPNDCPPLVYKSVALSILTCFCQEEELATHKDIID
AIPTLLEIVEQADDEDYEDNLIVVSEAYSCLKSIASHEPGQQALLATGAI
PKMSQIYSAQSFQTDEALHLIVLLVKQFGVVSWPEDPTAFHALIQRIALD
METDDTERKYELCRILADILITCRREIVINSLEGQIWPESLFKGCGDILK
AKIGPKQRDPALHLIATTLHVLGIQWAFMDEQKTFFLQLLQLGAIEVRMQ
MDEKKLETTFKQAELLTCCFSILEHCIEYMATDQLDLEPKEKQTTYTALK
GAFNQVLAVLTRVSQDKIRESSNPKDKKFVFAIVKVLSAWLAQETTAMRP
AIYKLLPFMLKVANESFQELKTWRAGTREGEPPIDVLRIMLPALCHFAVE
EEARRVLFTHKQDEVLLESLEFYFSIAHWKRPPIPRAERLKRMNEPDPVP
TPEQQAEMKVARSAIVALCNILMNFTVLEPKKAEDGPTFANLLKFVVENL
PELKDTPDNLVIHGNLAVLGLLLLKQQSKKVKQNDFSICRYIQATIRFLW
DAYNIDESNDPTALVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSE
FALESGWAEGIVKTLKKVKIGTLPANVKSAYEDFLSQLVDVNGDVQAVLK
KADALRVCRNHRMMDLGKKLFGD*
BS23367.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neurochondrin-PA | 723 | CG2330-PA | 1..723 | 1..723 | 3727 | 100 | Plus |
