BS23369.complete Sequence
977 bp assembled on 2011-01-25
GenBank Submission: KX802280
> BS23369.complete
GAAGTTATCAGTCGACATGCCAGCTGCTGTGCGCAAGTTCCGCCGCGAGA
CCAGTGAAATCAGCTGCTGTCTGAAGTACCTTTTGTTCGCCAGCAATGTG
ATCCTGTGGCTCTCGGCCCTGCTGGTCCTCTCCGTTGGCATCTGGGCCTG
GAGCGAGAAGGGCATGTTCCGCAACATTGCGCGGCTGCACTTCATCGCCC
TGGACCCGGCCTTCGTCCTGATCATCCTGGGAGGCGTCACCTTCCTACTG
GGCTTCATGGGCAGCGTGGGCGCCTTGCGCGAGAACACCTGCCTCCTGGG
GGCGTACGCCATCTTCTTGAGTGTCTTGCTTATCGCAGAGATCGGCTTCT
GTGCCGTGGCCTTCGTGCTCAAGGACAAGGGCTGGATCAAAGACCAGGCC
ACCGAGGGACTCAAGGCCTTCATTCGCCACTATCGCGAGGACGCAGACCA
GCAGAATCTCATTGATTGGATCCAGGAGGATTGGTTGCAGTGTTGCGGCA
TTGATGGTCCCAAGGACTGGGACAGCAACAACTACTTCAATTGCTCGTCT
ATCGCTATTGGCAGCAGGGAGGCGTGCGGAGTGCCATTCTCCTGCTGCCG
CAGACGTCCGCAGGAGGTGATCAAGAACAAGCAATGCGGCTACGATGTAC
GCAAGGAGGGATATCCGGTGGATAGGAATATACATGAGCGTGGCTGCTTG
CGCGCTGGCGAGGATTGGCTGGAGGCCCATCTGATTAGTGTGGCGATTGG
CTGCGTGGCTCTGCTCGTCCTGCAGGGCATGGAGTTGTCCAAAATAATCT
ACGAAAAGGGCTGTGTTCAAGCAGGCGAAGAATGGATGGAGCACAACTTG
ATTATTATTTCCGCAACTGTTATAGTTGTGATGTTTTTTCAGATCTTGGG
CATTTGCTTTGCTCAGAACCTGCGTGCCGATATCTACACTCAAAAGTCAA
AGTGGCACTGAAAGCTTTCTAGACCAT
BS23369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp26A-RB | 945 | CG9093-PB | 1..945 | 17..961 | 4725 | 100 | Plus |
| Tsp26A-RD | 828 | CG9093-PD | 1..759 | 17..775 | 3795 | 100 | Plus |
| Tsp26A-RC | 834 | CG9093-PC | 1..648 | 17..664 | 3240 | 100 | Plus |
| Tsp26A-RD | 828 | CG9093-PD | 757..828 | 890..961 | 360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp26A-RB | 3030 | CG9093-RB | 85..1029 | 17..961 | 4725 | 100 | Plus |
| Tsp26A-RD | 2913 | CG9093-RD | 85..843 | 17..775 | 3795 | 100 | Plus |
| Tsp26A-RC | 2919 | CG9093-RC | 85..732 | 17..664 | 3240 | 100 | Plus |
| Tsp26A-RD | 2913 | CG9093-RD | 841..912 | 890..961 | 360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6000312..6000599 | 17..304 | 1440 | 100 | Plus |
| 2L | 23513712 | 2L | 6000804..6001083 | 385..664 | 1400 | 100 | Plus |
| 2L | 23513712 | 2L | 6001474..6001593 | 773..892 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 6001159..6001270 | 665..776 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 6000663..6000744 | 304..385 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 6001660..6001737 | 884..961 | 360 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:32:47 has no hits.
BS23369.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:57 Download gff for
BS23369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp26A-RB | 82..1025 | 17..960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:35 Download gff for
BS23369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp26A-RB | 85..1028 | 17..960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:48 Download gff for
BS23369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp26A-RB | 85..1028 | 17..960 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:48 Download gff for
BS23369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6000312..6000599 | 17..304 | 100 | -> | Plus |
| 2L | 6000664..6000744 | 305..385 | 100 | -> | Plus |
| 2L | 6000805..6001083 | 386..664 | 100 | -> | Plus |
| 2L | 6001159..6001269 | 665..775 | 100 | -> | Plus |
| 2L | 6001477..6001593 | 776..892 | 100 | -> | Plus |
| 2L | 6001669..6001736 | 893..960 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:35 Download gff for
BS23369.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6000312..6000599 | 17..304 | 100 | -> | Plus |
| arm_2L | 6000664..6000744 | 305..385 | 100 | -> | Plus |
| arm_2L | 6000805..6001083 | 386..664 | 100 | -> | Plus |
| arm_2L | 6001159..6001269 | 665..775 | 100 | -> | Plus |
| arm_2L | 6001477..6001593 | 776..892 | 100 | -> | Plus |
| arm_2L | 6001669..6001736 | 893..960 | 100 | | Plus |
BS23369.pep Sequence
Translation from 16 to 960
> BS23369.pep
MPAAVRKFRRETSEISCCLKYLLFASNVILWLSALLVLSVGIWAWSEKGM
FRNIARLHFIALDPAFVLIILGGVTFLLGFMGSVGALRENTCLLGAYAIF
LSVLLIAEIGFCAVAFVLKDKGWIKDQATEGLKAFIRHYREDADQQNLID
WIQEDWLQCCGIDGPKDWDSNNYFNCSSIAIGSREACGVPFSCCRRRPQE
VIKNKQCGYDVRKEGYPVDRNIHERGCLRAGEDWLEAHLISVAIGCVALL
VLQGMELSKIIYEKGCVQAGEEWMEHNLIIISATVIVVMFFQILGICFAQ
NLRADIYTQKSKWH*
BS23369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp26A-PB | 314 | CG9093-PB | 1..314 | 1..314 | 1672 | 100 | Plus |
| Tsp26A-PD | 275 | CG9093-PD | 1..275 | 1..314 | 1422 | 87.6 | Plus |
| Tsp26A-PC | 277 | CG9093-PC | 1..277 | 1..314 | 1345 | 82.9 | Plus |
| Tsp3A-PB | 304 | CG10742-PB | 39..302 | 15..313 | 370 | 31.3 | Plus |
| Tsp3A-PA | 304 | CG10742-PA | 39..302 | 15..313 | 370 | 31.3 | Plus |
