Clone BS23370 Report

Search the DGRC for BS23370

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:233
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptDrep-3-RA
Protein status:BS23370.pep: full length peptide match
Sequenced Size:833

Clone Sequence Records

BS23370.complete Sequence

833 bp assembled on 2011-02-07

GenBank Submission: KX803076

> BS23370.complete
GAAGTTATCAGTCGACATGACAGCAATGAATGCGGATGAGACAAAGCTGG
CTGGAATGCCTCAAGGAGCTGAGGAGGAGCAGGAACCGGAGAGGGAGCAG
AAGAAGGAGAGCGATGGAGCAGCAGCTGCAGCAGGAGTACAGTGTGATCC
TGATAGCAGAATAGTGGCTCCGCCGCCCAGGCAGCGGACTCTGACAAGGA
CGGCCGAACTGGACGCGGACTGCGAGGACATCGAGTTAGATGCCGACGAT
GGTTTGGACGATGCGGCGGATAGCATCACCTTGGAGTTGGCCCTATCGCC
GCACAGCAGCGCCACGCCCACGCCCTCGCCCACCACCGCCGACGAGGATT
TCGCCCAGCTGGACAACAGCAAGCCCTTCAAGATCAAGGACATCACGAGG
AACATCCGCAAGGCAGTTGTGGCCACAACGCTGTCGGAGCTGCGGACGAA
GGTGTCGCTGAAATTTGAGCGGGCTCAGCCGGCGATACACCTGGATTGCG
ATGGCACCGAGGTCGACGATGAGGAGTACTTCAGCACTCTGGAGCCAAAT
GCCGAATTGATTGCCGTCTTTCCTGGCGAGCAGTGGCGCGATCCCAGTGA
CTACAATGCCAATCTGCGTCGCACATCGCTGGATGCACAGCGTCTGCGGA
GTCTGGTGAGCAAACTGCAGCCGAACTATATGAACGATGATGATTTGGAT
AAGCTGTCGAACATGGATCCCAACTCCCTGGTGGATATCACGGGTCGGGA
GCCCAAGGACAACGAATACTCAGCCAGAAGCGATGCCGCACGGCTATCAA
CGGAATTGTCTTGCTAAAAGCTTTCTAGACCAT

BS23370.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-3-RA 801 CG8364-PA 1..801 17..817 4005 100 Plus
Drep-3-RB 801 CG8364-PB 1..801 17..817 4005 100 Plus
Drep-1-RB 921 CG8357-PB 157..273 488..604 180 76.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-3-RA 1799 CG8364-RA 176..978 15..817 4015 100 Plus
Drep-3-RB 1558 CG8364-RB 181..983 15..817 4015 100 Plus
CG44314-RC 974 CG44314-RC 446..813 15..382 1840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12056019..12056386 15..382 1840 100 Plus
2R 25286936 2R 12061821..12062045 593..817 1125 100 Plus
2R 25286936 2R 12061502..12061717 377..592 1065 99.5 Plus
Blast to na_te.dros performed on 2014-11-26 22:11:14 has no hits.

BS23370.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 10:59:37 Download gff for BS23370.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-3-RA 179..977 17..815 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:40 Download gff for BS23370.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-3-RB 183..981 17..815 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:40 Download gff for BS23370.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-3-RB 183..981 17..815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:40 Download gff for BS23370.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12056021..12056386 17..382 100 -> Plus
2R 12061508..12061717 383..592 100 -> Plus
2R 12061821..12062043 593..815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:40 Download gff for BS23370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7943526..7943891 17..382 100 -> Plus
arm_2R 7949013..7949222 383..592 100 -> Plus
arm_2R 7949326..7949548 593..815 100   Plus

BS23370.pep Sequence

Translation from 16 to 816

> BS23370.pep
MTAMNADETKLAGMPQGAEEEQEPEREQKKESDGAAAAAGVQCDPDSRIV
APPPRQRTLTRTAELDADCEDIELDADDGLDDAADSITLELALSPHSSAT
PTPSPTTADEDFAQLDNSKPFKIKDITRNIRKAVVATTLSELRTKVSLKF
ERAQPAIHLDCDGTEVDDEEYFSTLEPNAELIAVFPGEQWRDPSDYNANL
RRTSLDAQRLRSLVSKLQPNYMNDDDLDKLSNMDPNSLVDITGREPKDNE
YSARSDAARLSTELSC*

BS23370.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-3-PA 266 CG8364-PA 1..266 1..266 1364 100 Plus
Drep-3-PB 266 CG8364-PB 1..266 1..266 1364 100 Plus
Drep-1-PA 297 CG8357-PA 9..168 116..245 382 51.9 Plus
Drep-1-PB 306 CG8357-PB 9..168 116..245 382 51.9 Plus
Drep-2-PB 549 CG1975-PB 59..151 101..190 150 38.7 Plus