Clone BS23371 Report

Search the DGRC for BS23371

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:233
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG3862-RA
Protein status:BS23371.pep: gold
Sequenced Size:1421

Clone Sequence Records

BS23371.complete Sequence

1421 bp assembled on 2011-01-25

GenBank Submission: KX802157

> BS23371.complete
GAAGTTATCAGTCGACATGGTTGGTTTAACCCGAAATACCATGCTGAAAA
CTCGGGGTATTGTGCTTGGCATCAGCAGGTCGTACACCGCCAAGGCGAAG
AGGGGTGTGCTGGCGCAGGACAAGTCGAAGATCAAGGAGTACTCACCGAA
GACGACGGACAGCCATGAGCACCGAGTTTACGTGTGGGGCTTTCAGGAAA
CCGGCGCTCTCGGTCTCCAGACCAACGTGAAGAAGGCCAAGGAACGCTAC
ACGGAGATGGTGCACCATCCCACCCGCTTGCAGTTCTCCAACAACAACGA
AATCACGGATGTGGCCGCCGGCTACGGGTTCACGGTCTACGCCGTGAATA
GAGATGACGGAGAGACGCTCTTTGGCAGCGGTTTGAACACCGACTCCCAA
CTGGGTTTCCAGGTGAAGGGAAATCCCAATGATCCGGCCAACCTTGACGT
GATCATTTATCCTACAGCCATTAAACTGCCGAGAGTTCAGGGAGAAACAG
ACGAGGACATGCGTGTGAAGAGCATGTCGGCGGGTAGAGCTCACCTGGTG
GTTCTGACCCAAAACGGAACCATTTTCACCCTGGGAAACAATTCGTACGG
CCAATGTGGCCGCTCCATCATAGAGGAGGAGCGGTACAGCAAGAGTGCCC
TGATCCACAGGATATCGCAGGAAGATATATGCGGCAAGGAGGATGAGGTG
GTCCAGGTGGAGTGCGGCCAGGACCACAGCATGTTTCTTACCAAAAAGGG
ACGCATTTACACATGTGGCTGGGGTGCGGATGGTCAAACAGGTCAGGGAA
ACTACCACACCGCCGGGCAGATAACCCTGATTGGAGGAGATGTGGAAAAG
GAGAAGATTGTGCGGCTCAGCTGCTCCTCGGACTGCGTTTTGGCCCTTAA
CGAGGCGGGCGATGCCTTTGGCTGGGGCAATTCTGAGTACGGACAGCTAG
ATGACTCAGAGCTGGCCGAAACCCAAATAAATATCCCTAGAGCTCTCAAA
CTAACGAAGTCCATCGGGAAAATCAAGGATGTGGCTGCGGGAGGCTCATT
TTGCATGGCCCTCAACGACCAGGGTCTGGTGTACACCTGGGGCTTTGGCA
TCCTCGGCTTCGGACCCTTCGTGGAGCAAACATCCAAGCCGCAGCATCTG
TTGCCGCCTTTATTCGGACGAAATGACTTCAGCAACGAAACCACAGTGGT
TTCCATCGGATGCGGAGTGTTTCACATGGGCGCCGTCAACTCGGACGGAG
ATCTCTTCATGTGGGGCAAGAACAGGTTCGGGCATCTGGGGCTGGGACAC
AAGAAGGACCAGTTCTTTCCCTTTAAGGCGGCCATCAACGGAAAGGTCAC
CAAAGTGGCCTACGGAGTGGATCACACCATTGCCTTGTGCAAGCCGTTCT
TCTAGAAGCTTTCTAGACCAT

BS23371.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3862-RA 1365 CG3862-PA 1..1365 41..1405 6825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3862-RA 1533 CG3862-RA 39..1430 15..1406 6960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 824432..825823 1406..15 6960 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:32:16 has no hits.

BS23371.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:54 Download gff for BS23371.complete
Subject Subject Range Query Range Percent Splice Strand
CG3862-RA 41..1429 17..1405 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:22 Download gff for BS23371.complete
Subject Subject Range Query Range Percent Splice Strand
CG3862-RA 41..1429 17..1405 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:39 Download gff for BS23371.complete
Subject Subject Range Query Range Percent Splice Strand
CG3862-RA 41..1429 17..1405 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:39 Download gff for BS23371.complete
Subject Subject Range Query Range Percent Splice Strand
2L 824433..825821 17..1405 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:22 Download gff for BS23371.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 824433..825821 17..1405 100   Minus

BS23371.pep Sequence

Translation from 16 to 1404

> BS23371.pep
MVGLTRNTMLKTRGIVLGISRSYTAKAKRGVLAQDKSKIKEYSPKTTDSH
EHRVYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDVA
AGYGFTVYAVNRDDGETLFGSGLNTDSQLGFQVKGNPNDPANLDVIIYPT
AIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCGRS
IIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIYTC
GWGADGQTGQGNYHTAGQITLIGGDVEKEKIVRLSCSSDCVLALNEAGDA
FGWGNSEYGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALN
DQGLVYTWGFGILGFGPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCG
VFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFPFKAAINGKVTKVAYG
VDHTIALCKPFF*

BS23371.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3862-PA 454 CG3862-PA 1..454 9..462 2407 100 Plus
CG9153-PC 1062 CG9153-PC 39..322 164..457 259 26.2 Plus
HERC2-PC 4912 CG11734-PC 2988..3349 54..456 259 27.1 Plus
CG9153-PA 1058 CG9153-PA 39..317 164..457 251 25.9 Plus
CG9153-PB 1058 CG9153-PB 39..317 164..457 251 25.9 Plus
CG9153-PA 1058 CG9153-PA 7..241 186..435 240 28.7 Plus
CG9153-PC 1062 CG9153-PC 7..246 186..435 237 28.5 Plus
HERC2-PC 4912 CG11734-PC 4140..4413 169..457 237 27.1 Plus
HERC2-PC 4912 CG11734-PC 2992..3298 122..457 227 27 Plus
HERC2-PC 4912 CG11734-PC 3026..3248 234..459 215 31.6 Plus
HERC2-PC 4912 CG11734-PC 601..853 149..419 184 26 Plus
HERC2-PC 4912 CG11734-PC 4188..4415 165..409 175 26 Plus
HERC2-PC 4912 CG11734-PC 4154..4418 51..354 172 23.7 Plus