Clone BS23374 Report

Search the DGRC for BS23374

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:233
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptAtg10-RB
Protein status:BS23374.pep: full length peptide match
Sequenced Size:691

Clone Sequence Records

BS23374.complete Sequence

691 bp assembled on 2011-01-25

GenBank Submission: KX805432

> BS23374.complete
GAAGTTATCAGTCGACATGTATGAGGCTTGTTTCCCACGCAAAAGAAATT
GTTTTCTTTCAAGTATCGTTACGCGTGGGTATTTGAAGTGTTTAAAGATT
TTAACACGCATATTTTTGTGCTTTATTTTCAGCATTATGGGCGACTTGAG
CTGGAAAGATTTTTTGAGCCAGGCCAAGCAGTTCCTCGAAATTTCGCAGA
AGTTGGGTGATAATTGGATATTGGAACAAAAGGACTCGAATGAACCAAAC
ACCTATCTCAAATGTAGTCAGAAGATTAAATGCCGAGGTGGCAAGGACAA
CTCGGCTGAGTTGGTTAGTGTGGAGTACCATGTGGTCTTCAGTGTTTCCT
ATCAAGTACCAATGTTGTTCTTCCAGGCACACAGATCAGATGGAAGTCTT
TTGGATGTGGAGGCCACTTGGCGAATGTTCATGCCCGAATCGAAGGCCAG
CGATCTCCACCAGATACTCACCCAGATGGATCACCCGGTGCTTTTCAGAC
CCTTTATGGCATTGCATCCATGCCGCACCGCCGAAGTGCTAAAGCAGTTC
GGAAAGCCCAGCTGCAACCAGGTGCTTACCTTCATCAGTCTGTACGGACC
CCACGTGCAGTTGCACCTGCAAAATGCGTACGGCTTAAGCCAAGAGTATA
CGTAAAAGCTTTCTAGACCATTCGTTTGGCGCGCAAAACGG

BS23374.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Atg10-RD 519 CG12821-PD 1..519 137..655 2595 100 Plus
Atg10-RB 519 CG12821-PB 1..519 137..655 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Atg10-RD 1516 CG12821-RD 52..576 131..655 2625 100 Plus
Atg10-RB 1200 CG12821-RB 52..576 131..655 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7834311..7834578 388..655 1340 100 Plus
2R 25286936 2R 7833818..7834034 17..233 1085 100 Plus
2R 25286936 2R 7834096..7834255 230..389 800 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:32:56 has no hits.

BS23374.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:59 Download gff for BS23374.complete
Subject Subject Range Query Range Percent Splice Strand
CG12821-RC 1340..1981 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:38 Download gff for BS23374.complete
Subject Subject Range Query Range Percent Splice Strand
CG12821-RB 52..579 131..662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:54 Download gff for BS23374.complete
Subject Subject Range Query Range Percent Splice Strand
Atg10-RB 52..579 131..662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:54 Download gff for BS23374.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7834099..7834255 233..389 100 -> Plus
2R 7834313..7834581 390..662 98   Plus
2R 7833818..7834033 17..232 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:38 Download gff for BS23374.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3721323..3721538 17..232 100 -> Plus
arm_2R 3721604..3721760 233..389 100 -> Plus
arm_2R 3721818..3722086 390..662 98   Plus

BS23374.pep Sequence

Translation from 16 to 654

> BS23374.pep
MYEACFPRKRNCFLSSIVTRGYLKCLKILTRIFLCFIFSIMGDLSWKDFL
SQAKQFLEISQKLGDNWILEQKDSNEPNTYLKCSQKIKCRGGKDNSAELV
SVEYHVVFSVSYQVPMLFFQAHRSDGSLLDVEATWRMFMPESKASDLHQI
LTQMDHPVLFRPFMALHPCRTAEVLKQFGKPSCNQVLTFISLYGPHVQLH
LQNAYGLSQEYT*

BS23374.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Atg10-PD 172 CG12821-PD 1..172 41..212 916 100 Plus
Atg10-PB 172 CG12821-PB 1..172 41..212 916 100 Plus