BS23375.complete Sequence
653 bp assembled on 2011-01-25
GenBank Submission: KX802842
> BS23375.complete
GAAGTTATCAGTCGACATGGTCGCTCAGTGGAAAATCATCAACGAGAACT
ACAAAAATCTGGAGGGCTACAAGCGTGTGGCCTGGCCACCGGCCTCCGAG
GAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCAGACTCAGAGTCCGGC
TCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACGCTCCCACAGCAGCAG
CTGCCGCTCCACCTCAGCCCCAGTTGCCCTACTCGCAGGATCAGACTGAT
CTGCAGCAGCAGCAACAACAGCAGCAGCAGCAGTATCCGGGAGCCTACGC
TGGCCAGGATAGCTACCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCA
AGGAGGCTCCAGTCAGCCAGAAGCCTGCACCAGTCTACACTTCGCAGCCA
GCCGCCGTCAGTTATCAGGGAGGCAGCAAATTGCGCGGAGATTTGAAATG
GCCACCACCGGAGTACAAGGAGGCCGCGGCTCGCGAGAACGAGGAACGAC
GCCAGTTGGCGTTGGGTCCCGTCTGCCGTCCCAGGAGAGTTAACCGGGAC
TACACACCCTTCTTTGCCAAGCACCAGTTGAACAATGGCTATCCCAGCTA
CAAGGTGCCTCCGGGCACCCAGCACATTTTCGGCTAAAAGCTTTCTAGAC
CAT
BS23375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RI | 621 | CG43897-PI | 1..621 | 17..637 | 3105 | 100 | Plus |
| CG43897-RR | 1341 | CG43897-PR | 919..1341 | 215..637 | 2115 | 100 | Plus |
| CG43897-RQ | 900 | CG43897-PQ | 478..900 | 215..637 | 2115 | 100 | Plus |
| CG43897-RR | 1341 | CG43897-PR | 1..201 | 17..217 | 1005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RI | 2548 | CG43897-RI | 599..1220 | 16..637 | 3110 | 100 | Plus |
| CG43897-RR | 3268 | CG43897-RR | 1518..1940 | 215..637 | 2115 | 100 | Plus |
| CG43897-RQ | 2827 | CG43897-RQ | 1077..1499 | 215..637 | 2115 | 100 | Plus |
| CG43897-RR | 3268 | CG43897-RR | 599..800 | 16..217 | 1010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832475..9832680 | 215..420 | 1030 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830785 | 65..217 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9832738..9832867 | 419..548 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9832927..9833017 | 547..637 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 9830020..9830070 | 16..66 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:33:00 has no hits.
BS23375.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:15:59 Download gff for
BS23375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RI | 600..1218 | 17..635 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:40 Download gff for
BS23375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RI | 600..1218 | 17..635 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:56 Download gff for
BS23375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RI | 600..1218 | 17..635 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:56 Download gff for
BS23375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9830021..9830069 | 17..65 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 66..217 | 100 | -> | Plus |
| 3L | 9832478..9832679 | 218..419 | 100 | -> | Plus |
| 3L | 9832739..9832866 | 420..547 | 100 | -> | Plus |
| 3L | 9832928..9833015 | 548..635 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:40 Download gff for
BS23375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9823121..9823169 | 17..65 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 66..217 | 100 | -> | Plus |
| arm_3L | 9825578..9825779 | 218..419 | 100 | -> | Plus |
| arm_3L | 9825839..9825966 | 420..547 | 100 | -> | Plus |
| arm_3L | 9826028..9826115 | 548..635 | 100 | | Plus |
BS23375.pep Sequence
Translation from 16 to 636
> BS23375.pep
MVAQWKIINENYKNLEGYKRVAWPPASEERIIREFTPQPQTQSPAPGAGG
YYPQAHAPTAAAAAPPQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSY
RGASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEY
KEAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPG
TQHIFG*
BS23375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-PI | 206 | CG43897-PI | 1..206 | 1..206 | 1116 | 100 | Plus |
| CG43897-PQ | 299 | CG43897-PQ | 108..299 | 18..206 | 782 | 78.5 | Plus |
| CG43897-PE | 315 | CG43897-PE | 124..315 | 18..206 | 782 | 78.5 | Plus |
| CG43897-PG | 354 | CG43897-PG | 163..354 | 18..206 | 782 | 78.5 | Plus |
| CG43897-PF | 354 | CG43897-PF | 163..354 | 18..206 | 782 | 78.5 | Plus |
| CG43897-PQ | 299 | CG43897-PQ | 1..129 | 1..128 | 413 | 65.7 | Plus |
| CG43897-PE | 315 | CG43897-PE | 33..145 | 17..128 | 327 | 61 | Plus |
| CG43897-PG | 354 | CG43897-PG | 72..184 | 17..128 | 327 | 61 | Plus |
