BS23381.complete Sequence
1328 bp assembled on 2011-02-07
GenBank Submission: KX803046
> BS23381.complete
GAAGTTATCAGTCGACATGAAATTGAGCAAGAGCCTGGCAAACTGTCGCG
CCATCCGGCGCTATTTGCTCATCTTCACGGCCGTGTCCCTGCTGCTCCTG
CCCCTCTCCCTGGCCTACCTGGTGTGGAACGAGCAGCTGCAGAAGATCCG
AGGATTCGAGGCCTTTAATGTGCAGCAGCAATCGCCGCAGCAGCCGCAGC
CGCAGCAGCAACAGCAGGAGCAGCAGCAGCAGCCGCAGCAACATGGCCAG
TTTCCGTATCCGGTGGTCCGGTATCCGGTGCTGCTGCTGAACAAGAACAA
GAACAAGGACCTGACCGTCGTGGCAACGGGCAAGACCAAGAACAAGTGGC
GCTATGTTGATAAAGACAGCAACCAGACACTCCTGCCCCTCATCCCCGAG
CATGCCGTGCAGACACTCACGCCGCAGGAAATGCTCCAGGTGGAGCAGCG
GATGGACCAGCGCAGGGAGCGGCTAAAGGACAAGTGCTCCGCCTACGGCC
TGGATGTCCTGGGTCACGACGCGTGGCACACGCCGAACACGTGGGAATTT
TTGGTCAACAAAAAGTATCACATTATCTGGTGCAATGTCTTTAAGGCTGC
CTCATCGTCCTGGATGTTCAACTTCAACGTCCTGGCCGGTTACTCGCCCA
GCTATCTGCGCAAAACCAAGAAGATCCTTCTCAACCTGGCCAGGGAGCGC
TATCCCAGGGTGACCCTCGACGAGCTGCGTGAGGCACAGAACTACTCGGT
GACCTTTATCATCGCACGCGATCCCTTCGAGCGGCTGTTGAGTGCCTATC
GGGACAAGATGGTGTTCGCCCTGCCCTACTCCTTCCACGATAAGTTGGGA
CGCAGCATTGTGCGCAACTACCGCAAGAAGCCGTCACTGGCTGCCCGTGC
GGCCAACACAAAGTTCCCATCGTTTCCGGAATTCGTGCACTGGCTGCTCG
ACCAGGTGAAGCGCGGCAGCTTCATCGACATGCACTTCGTGGCGGCCACC
TCGTTCTGCACACCCTGCCTCATCCGGTTCGACATGATACTGAAGTTCGA
ATCGCTGGCGGAGGATCAATTATATCTAATCGAAAAGACTGGCCTCAAGC
GGGTGATAGCGCCCGTGTGGCGCAACATGGGCAAGGGCCGCAAGACGCAC
GAGCTCCAGCAGCAGTTCTATGCGCAGCTGACACGCCAGGAAATGCTGGA
GCTCTACGAGTATTACAAATACGACTTCGAGCTGTTCGACTACGATATCC
AGGAGTATCTGCAGGTTGCCCGGCCGGATGAGGCCGAAAGTCCGGCGGGC
ACAAAGAATTAAAAGCTTTCTAGACCAT
BS23381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13937-RG | 1296 | CG13937-PG | 1..1296 | 17..1312 | 6480 | 100 | Plus |
| CG13937-RF | 1296 | CG13937-PF | 1..1296 | 17..1312 | 6480 | 100 | Plus |
| CG13937-RH | 1281 | CG13937-PH | 1..1281 | 17..1312 | 6220 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13937-RG | 1949 | CG13937-RG | 517..1813 | 17..1313 | 6485 | 100 | Plus |
| CG13937-RF | 1751 | CG13937-RF | 319..1615 | 17..1313 | 6485 | 100 | Plus |
| CG13937-RH | 1745 | CG13937-RH | 328..1609 | 17..1313 | 6225 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1876848..1877187 | 1218..879 | 1700 | 100 | Minus |
| 3L | 28110227 | 3L | 1878355..1878565 | 365..155 | 1040 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1877291..1877448 | 880..723 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 1877890..1878039 | 514..365 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 1877512..1877663 | 730..579 | 745 | 99.3 | Minus |
| 3L | 28110227 | 3L | 1881128..1881272 | 161..17 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 1876687..1876785 | 1313..1215 | 480 | 99 | Minus |
| 3L | 28110227 | 3L | 1877758..1877828 | 582..512 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:22:08 has no hits.
BS23381.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 14:54:52 Download gff for
BS23381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13937-RG | 517..1810 | 17..1310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:42 Download gff for
BS23381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13937-RF | 319..1612 | 17..1310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:55 Download gff for
BS23381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13937-RF | 319..1612 | 17..1310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:55 Download gff for
BS23381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1876690..1876781 | 1219..1310 | 100 | <- | Minus |
| 3L | 1876848..1877185 | 881..1218 | 100 | <- | Minus |
| 3L | 1877291..1877446 | 725..880 | 100 | <- | Minus |
| 3L | 1877518..1877662 | 580..724 | 100 | <- | Minus |
| 3L | 1877761..1877827 | 513..579 | 100 | <- | Minus |
| 3L | 1877892..1878039 | 365..512 | 100 | <- | Minus |
| 3L | 1878356..1878559 | 161..364 | 100 | <- | Minus |
| 3L | 1881129..1881272 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:42 Download gff for
BS23381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1877518..1877662 | 580..724 | 100 | <- | Minus |
| arm_3L | 1877761..1877827 | 513..579 | 100 | <- | Minus |
| arm_3L | 1877892..1878039 | 365..512 | 100 | <- | Minus |
| arm_3L | 1878356..1878559 | 161..364 | 100 | <- | Minus |
| arm_3L | 1881129..1881272 | 17..160 | 100 | | Minus |
| arm_3L | 1876690..1876781 | 1219..1310 | 100 | <- | Minus |
| arm_3L | 1876848..1877185 | 881..1218 | 100 | <- | Minus |
| arm_3L | 1877291..1877446 | 725..880 | 100 | <- | Minus |
BS23381.pep Sequence
Translation from 16 to 1311
> BS23381.pep
MKLSKSLANCRAIRRYLLIFTAVSLLLLPLSLAYLVWNEQLQKIRGFEAF
NVQQQSPQQPQPQQQQQEQQQQPQQHGQFPYPVVRYPVLLLNKNKNKDLT
VVATGKTKNKWRYVDKDSNQTLLPLIPEHAVQTLTPQEMLQVEQRMDQRR
ERLKDKCSAYGLDVLGHDAWHTPNTWEFLVNKKYHIIWCNVFKAASSSWM
FNFNVLAGYSPSYLRKTKKILLNLARERYPRVTLDELREAQNYSVTFIIA
RDPFERLLSAYRDKMVFALPYSFHDKLGRSIVRNYRKKPSLAARAANTKF
PSFPEFVHWLLDQVKRGSFIDMHFVAATSFCTPCLIRFDMILKFESLAED
QLYLIEKTGLKRVIAPVWRNMGKGRKTHELQQQFYAQLTRQEMLELYEYY
KYDFELFDYDIQEYLQVARPDEAESPAGTKN*
BS23381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13937-PG | 431 | CG13937-PG | 1..431 | 1..431 | 2270 | 100 | Plus |
| CG13937-PF | 431 | CG13937-PF | 1..431 | 1..431 | 2270 | 100 | Plus |
| CG13937-PH | 426 | CG13937-PH | 1..426 | 1..431 | 2229 | 98.8 | Plus |
| CG13937-PI | 363 | CG13937-PI | 48..363 | 116..431 | 1669 | 99.7 | Plus |
| CG13937-PE | 363 | CG13937-PE | 48..363 | 116..431 | 1669 | 99.7 | Plus |
| CG13937-PI | 363 | CG13937-PI | 1..81 | 1..75 | 252 | 67.9 | Plus |
