BS23382.complete Sequence
1457 bp assembled on 2011-02-07
GenBank Submission: KX800952
> BS23382.complete
GAAGTTATCAGTCGACATGGCAAGTGCTATGCGTGGTGAAAAGTGCGAAA
GGAGCCGCATTCGAGAGCTCGTCCTGATCCTGTCGCTGATCACCATGGCC
GGCGACTCGAGGGCCACTCCCTTCGATCCCTCCTTCTTCATAGAGGGCGT
GCAGTCGGAGGTGGTTAATCCGTTCAACCGCACCATCCTGAATCGCTTCA
ACCTGACCGAGGAACAGATCCTGAGCATCCAGAACCGCAGCAATCCGAAC
ATGCGCGACGACTCCGCCCAGTCCTCCAACCAGCAGTATCTGCAGCAGGT
CGCCACTCAGCGACTCAACGATATCTTTAAGCGCGTCCAGAAGGCCATCT
CAAACGAGCCCAACGGCAGCGCATCCAAGGAGAAGGCCGGCTTTCCCATT
TGCAATGCGGAGACAACCAACCCGGAGGACTGGTCCCTGGGCAACAATGT
GACGCTCCAGTTTGCCAGCAGTGTTTTCATATCCAATAACGACGACCGTC
TGAGCAGCGCCCTTCTCCGCCTCTACAAGACCAATCCTGGCCAGACTCGC
GAGCACAATCCCGGCCAGGCTTCGACTCAGCCCATCAGCACTGAGAACCC
GGGCAATACGGCTCCAAATTGCGCGGAGCAGCCACCCGTGGGTCCTCAAA
TCCGTGTCACCGTCTCCATTGTCCACCAGCAGAGGAAGAAACAGCGCAAG
AAGCGCACCTGCAACACCGCCATGCTGAGCAGCTCCTCCACCGGCTGGGT
GGAGATCGACGTGAAGTGCGCCCTCGCCTACTGGGAGCAGCAGCACCGCC
AGCAGCTTCGCCAGCAGCAGCCGCTGCAGCCCCAGCTGACCGCCAGCGTG
GTGGGCATCCTGATGATCGAGGTGCACGACGATGAGGAGAATCTGCTGAG
GCCGGGGCTCTACTTCGCGCCACCCACTTGCGACCAGGCAGACATTGCTG
TCCCATGGAGCGTTTACCGAACAGAACCGTTTAAGTCTCATCTGGCGAGT
TGGACATTGCCAAGAAAACCAAGGCTAGACATCTTCTTCAACGGTAGCAA
CTCCATGAAGAACAGCTACAACACCCCCAAGAGCAGAGCGTTTATCGAAT
CCACCACATCCAACTCACCCACGATCGACAACCAGCTGGACGAGAGCGGC
GAGTACGAGAGCCAGCAGCGTGTGCATGCCCCCCTGGTCCACCACCGGCG
GCACCACCACAACCACCAGCAACCGGAATCGGAGTCCGAGTCCGCACAAC
TCGAGGCCGAGATCGAGGCGGAGGAGCTGATGTCCTCGGCGAGCAACAGT
GAACAGCAAATGGAGCCGATTTCGAACCACCACCGACATCGGACCGGCCA
CCATCACCCGCATCACCAGCTGCACCAGCACCATCACCATCATCATCGCC
ACACCAAGCACCACAGGATTCCAGCCCACAAGCAGGAATAGAAGCTTTCT
AGACCAT
BS23382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana-RA | 1425 | CG8084-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
| ana-RB | 1434 | CG8084-PB | 1..1434 | 17..1441 | 7000 | 99.4 | Plus |
| ana-RC | 1173 | CG8084-PC | 45..1173 | 313..1441 | 5645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana-RA | 2417 | CG8084-RA | 235..1660 | 17..1442 | 7130 | 100 | Plus |
| ana-RB | 2426 | CG8084-RB | 235..1669 | 17..1442 | 7005 | 99.4 | Plus |
| ana-RC | 2072 | CG8084-RC | 186..1315 | 313..1442 | 5650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9076368..9076797 | 1013..1442 | 2150 | 100 | Plus |
| 2R | 25286936 | 2R | 9074070..9074450 | 312..692 | 1905 | 100 | Plus |
| 2R | 25286936 | 2R | 9069331..9069626 | 17..312 | 1480 | 100 | Plus |
| 2R | 25286936 | 2R | 9074840..9075088 | 693..941 | 1245 | 100 | Plus |
| 2R | 25286936 | 2R | 9075870..9075945 | 939..1014 | 380 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2427..2858 | 1011..1447 | 154 | 54.9 | Plus |
BS23382.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 11:51:01 Download gff for
BS23382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana-RA | 231..1655 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:55 Download gff for
BS23382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana-RA | 235..1659 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:34 Download gff for
BS23382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana-RA | 235..1659 | 17..1441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:34 Download gff for
BS23382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9069331..9069626 | 17..312 | 100 | -> | Plus |
| 2R | 9074071..9074450 | 313..692 | 100 | -> | Plus |
| 2R | 9074840..9075088 | 693..941 | 100 | -> | Plus |
| 2R | 9075873..9075945 | 942..1014 | 100 | -> | Plus |
| 2R | 9076370..9076796 | 1015..1441 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:55 Download gff for
BS23382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4956836..4957131 | 17..312 | 100 | -> | Plus |
| arm_2R | 4961576..4961955 | 313..692 | 100 | -> | Plus |
| arm_2R | 4962345..4962593 | 693..941 | 100 | -> | Plus |
| arm_2R | 4963378..4963450 | 942..1014 | 100 | -> | Plus |
| arm_2R | 4963875..4964301 | 1015..1441 | 100 | | Plus |
BS23382.pep Sequence
Translation from 16 to 1440
> BS23382.pep
MASAMRGEKCERSRIRELVLILSLITMAGDSRATPFDPSFFIEGVQSEVV
NPFNRTILNRFNLTEEQILSIQNRSNPNMRDDSAQSSNQQYLQQVATQRL
NDIFKRVQKAISNEPNGSASKEKAGFPICNAETTNPEDWSLGNNVTLQFA
SSVFISNNDDRLSSALLRLYKTNPGQTREHNPGQASTQPISTENPGNTAP
NCAEQPPVGPQIRVTVSIVHQQRKKQRKKRTCNTAMLSSSSTGWVEIDVK
CALAYWEQQHRQQLRQQQPLQPQLTASVVGILMIEVHDDEENLLRPGLYF
APPTCDQADIAVPWSVYRTEPFKSHLASWTLPRKPRLDIFFNGSNSMKNS
YNTPKSRAFIESTTSNSPTIDNQLDESGEYESQQRVHAPLVHHRRHHHNH
QQPESESESAQLEAEIEAEELMSSASNSEQQMEPISNHHRHRTGHHHPHH
QLHQHHHHHHRHTKHHRIPAHKQE*
BS23382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana-PA | 474 | CG8084-PA | 1..474 | 1..474 | 2517 | 100 | Plus |
| ana-PB | 477 | CG8084-PB | 1..477 | 1..474 | 2500 | 99.2 | Plus |
| ana-PC | 390 | CG8084-PC | 10..390 | 94..474 | 2030 | 98.4 | Plus |
