BS23383.complete Sequence
1568 bp assembled on 2011-02-18
GenBank Submission: KX804783
> BS23383.complete
GAAGTTATCAGTCGACATGTTCAAGTTCAACAAGGCCGCTCAGCAGCAGC
GGATCGACAATCGGAACAGTGCCGTCACAGGACACGATCCCTTCGTCCGA
CCACCAGTGCCCGAAAAGAAAGTGAGGAACATTATGAAGAAGCTGCACAA
GGCGAACGGCCTGAAACGCTCCAACTCGGCGATCGAGTTCGATGTCTCGG
CCCTGACAGCTGCCAATCGCCGACAGATCTATAGTAGCAATCGGTCGGCG
AGCTCGGAGCAAGATAACTCAGATCTATCCGAGCACTCGGAGAAATCGCC
GCTGGTTAGCGCGAGGTTAGACAATCTAGCTAGGCTCTTCTTTAGCAAGT
CGATGCCAGCGGAAACCGGAAGTAGAGATACCATAGATTCAGTACTGACA
ACAAGGCCCAACATCAAGTATCAGTACTCCGCCTTGGACAGTGGCAATGG
GATCGTGGAGCGAAGTCCCCGGGAGCGAGCTCAGAGGGAAAAGGCACTGA
ATGCCACTCAGGAATGGATTCAAGGTGCCAATGGGCGCTACGAAGTGATT
GCCCACCTGGATGAGATCGGTTCGAGGCATGGCAAGAACTGGTTTCTTGT
CACAGATGCCTCGGTACGCACGGATCGTCTACAGACTCTGCTACCTCTGC
CCCCCGATTGTGTGGCCTTCGAGGATCTCCCGCCCAACGAATGCGCCAGG
GAAATACTCATGGAGCTCCTGGGCTCGCTGCATCATCCGTACATATATCC
CGTTCTGGACTTGGGCTTTTTGCGCAACAGCTCGTATAACTACGCCTGCC
TGGTGACGCCCTTTAACTCGCGGGGCAGTCTTAAAGATCTCATCTATAAG
GCGCAGTGGAATGAGCCGTGGGCCAGGAAGTACACGCGTAAGCCAAATGG
CTTACCGGTGAGCCAGGTGCAGCGCCTGGGACGACAGATTCTGGAGGCAC
TGCTCTTCCTGAAGGAGCGCGGTTTTCCGCTTCACGGTCACCTGCACAGC
GGCAATGTCATCCTGCAGAACGGGGCAGCCAGGTTATCGGGCCTGGAGAA
CGGCCTCCTGGGCCTCAGTTCGCGCATTAACGCCGTCATGTGGTCCCGCT
CGGTCACCGAGATCGAGAACGTGGACATCGTCTGCTTTGGCCACCTGCTC
TACGAGATGTGCACGGGCCAGGAGCTGACAACCCCCAAGCCGTCCATGCG
GGTGCTCGAGATGGAGCTGCAGCACTATCCACAAATTGGCCAGATTCTGG
AGATATTAGGTCTAATCTTTGAGCCGCCTAGCGGTGTCTGCCCCTCCGTT
GAGGACTTAGTCCTTTGCGATCTGTTTCGCAGCATCGATTTGCGCGAGCT
TCGCGGTCCCTGTTTCAGTACAATTAAGCCGAGCCTCAGCAGGTCCACCT
TGAACCTGCTGCAAGCGGTAAAGAAGCGCCAATGTGCCTCCCTGGGCCAT
TCCCTCAGTGAGGCCAACTCGCCCTGTACGCCCCCTTCGACGCCGCACGA
TCGACGAACAGGTGTTCTGCCTGCGCCCTATGAAGTCTTTCGTATGTACT
AAAAGCTTTCTAGACCAT
BS23383.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slob-RE | 1536 | CG43756-PE | 1..1536 | 17..1552 | 7680 | 100 | Plus |
| Slob-RD | 1536 | CG43756-PD | 1..1536 | 17..1552 | 7680 | 100 | Plus |
| Slob-RB | 1917 | CG43756-PB | 369..1917 | 16..1552 | 7530 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slob-RE | 2500 | CG43756-RE | 790..2327 | 16..1553 | 7690 | 100 | Plus |
| Slob-RD | 2449 | CG43756-RD | 739..2276 | 16..1553 | 7690 | 100 | Plus |
| Slob-RA | 2461 | CG43756-RA | 739..2288 | 16..1553 | 7535 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7651237..7651475 | 851..613 | 1195 | 100 | Minus |
| 2L | 23513712 | 2L | 7649304..7649517 | 1243..1030 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 7651533..7651745 | 616..404 | 1065 | 100 | Minus |
| 2L | 23513712 | 2L | 7650969..7651154 | 1034..849 | 930 | 100 | Minus |
| 2L | 23513712 | 2L | 7655053..7655223 | 406..236 | 855 | 100 | Minus |
| 2L | 23513712 | 2L | 7648747..7648889 | 1512..1370 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 7648958..7649086 | 1369..1241 | 645 | 100 | Minus |
| 2L | 23513712 | 2L | 7655545..7655664 | 237..118 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 7655999..7656101 | 118..16 | 515 | 100 | Minus |
| 2L | 23513712 | 2L | 7647226..7647267 | 1553..1512 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:48:40 has no hits.
BS23383.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:13 Download gff for
BS23383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slob-RA | 745..1978 | 22..1252 | 99 | -> | Plus |
| Slob-RA | 1988..2285 | 1253..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:25 Download gff for
BS23383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slob-RD | 745..2273 | 22..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:24 Download gff for
BS23383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slob-RD | 745..2273 | 22..1550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:24 Download gff for
BS23383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7650971..7651152 | 851..1032 | 100 | <- | Minus |
| 2L | 7651238..7651474 | 614..850 | 100 | <- | Minus |
| 2L | 7655545..7655664 | 118..237 | 100 | <- | Minus |
| 2L | 7656000..7656095 | 22..117 | 100 | | Minus |
| 2L | 7655054..7655221 | 238..405 | 100 | <- | Minus |
| 2L | 7649304..7649514 | 1033..1243 | 100 | <- | Minus |
| 2L | 7651536..7651743 | 406..613 | 100 | <- | Minus |
| 2L | 7647229..7647266 | 1513..1550 | 100 | <- | Minus |
| 2L | 7648747..7648889 | 1370..1512 | 100 | <- | Minus |
| 2L | 7648958..7649083 | 1244..1369 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:25 Download gff for
BS23383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7648747..7648889 | 1370..1512 | 100 | <- | Minus |
| arm_2L | 7648958..7649083 | 1244..1369 | 100 | <- | Minus |
| arm_2L | 7649304..7649514 | 1033..1243 | 100 | <- | Minus |
| arm_2L | 7650971..7651152 | 851..1032 | 100 | <- | Minus |
| arm_2L | 7647229..7647266 | 1513..1550 | 100 | <- | Minus |
| arm_2L | 7651238..7651474 | 614..850 | 100 | <- | Minus |
| arm_2L | 7651536..7651743 | 406..613 | 100 | <- | Minus |
| arm_2L | 7655054..7655221 | 238..405 | 100 | <- | Minus |
| arm_2L | 7655545..7655664 | 118..237 | 100 | <- | Minus |
| arm_2L | 7656000..7656095 | 22..117 | 100 | | Minus |
BS23383.pep Sequence
Translation from 16 to 1551
> BS23383.pep
MFKFNKAAQQQRIDNRNSAVTGHDPFVRPPVPEKKVRNIMKKLHKANGLK
RSNSAIEFDVSALTAANRRQIYSSNRSASSEQDNSDLSEHSEKSPLVSAR
LDNLARLFFSKSMPAETGSRDTIDSVLTTRPNIKYQYSALDSGNGIVERS
PRERAQREKALNATQEWIQGANGRYEVIAHLDEIGSRHGKNWFLVTDASV
RTDRLQTLLPLPPDCVAFEDLPPNECAREILMELLGSLHHPYIYPVLDLG
FLRNSSYNYACLVTPFNSRGSLKDLIYKAQWNEPWARKYTRKPNGLPVSQ
VQRLGRQILEALLFLKERGFPLHGHLHSGNVILQNGAARLSGLENGLLGL
SSRINAVMWSRSVTEIENVDIVCFGHLLYEMCTGQELTTPKPSMRVLEME
LQHYPQIGQILEILGLIFEPPSGVCPSVEDLVLCDLFRSIDLRELRGPCF
STIKPSLSRSTLNLLQAVKKRQCASLGHSLSEANSPCTPPSTPHDRRTGV
LPAPYEVFRMY*
BS23383.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slob-PE | 511 | CG43756-PE | 1..511 | 1..511 | 2664 | 100 | Plus |
| Slob-PD | 511 | CG43756-PD | 1..511 | 1..511 | 2664 | 100 | Plus |
| Slob-PA | 515 | CG43756-PA | 1..515 | 1..511 | 2649 | 99.2 | Plus |
| Slob-PB | 638 | CG43756-PB | 124..638 | 1..511 | 2649 | 99.2 | Plus |
| Slob-PC | 515 | CG43756-PC | 1..515 | 1..511 | 2649 | 99.2 | Plus |
