BS23388.complete Sequence
1958 bp assembled on 2011-02-18
GenBank Submission: KX803606
> BS23388.complete
GAAGTTATCAGTCGACATGAACTTGTGTTCCTCGGGCGCAACGGCATCGA
CCACATCGTTATCATCCACGGGCCAGGCGGAGCGGAGCGGCGGAGTACCA
GGAGGAGGAGCAGAAGGCGGCGGAGGCAGCGGTAACAGCGGCGGCGGCGG
CAAAACCAGCAACGGATCCGCCGAGGCCCCAACACTCTGCTTTGCGGGAG
GATCGGGCACAGCAGGCGCGATCGCCGGAACGGAGGAGCTGTCCAACGCC
AACAGTCCGGCCAACGGAGCAGGAGGAGCAACTGGATCAACCGGCAGTGG
ACAACAGCCGACTGGCAGCAACGGACACAGCCACCTTCACAACGAAAACA
ACGCAAATATGCCGCCCGAAACGCGTCCCAAAATGGTGACCGTCAAGCAT
CCGGAGTCCAACAAGCCCAAGCCCACCACAAAGAAAAGCAAGCCCATCCA
GGCCGACCAGGATGTCATCAAGGCGCTGCAGCGCTGTCGTGATGAAGGCA
TCAAGCGCTTGGACTTGAGCAAATCTTCGATCACGGTGATCCCCAGCACG
GTAAAGGAGTGCGTCCATCTCACGGAACTTTATCTGTACAGCAATAAGAT
CGGTCAACTTCCGCCGGAAATCGGCTGTCTGGTGAGCCTACGTAACCTTG
CGCTCAACGAGAACTCGCTGACCTCGCTGCCCGAGTCCCTGCAAAACTGC
AGTCAACTGAAGGTGCTGGATCTGCGGCATAACAAGCTGGCGGAGATTCC
GCCCGTGATTTACCGTCTGCGCAGCTTGACCACACTTTACCTGCGCTTCA
ATCGAATCACCGCCGTGGCAGACGATCTGCGCCAGCTGGTCAACCTGACC
ATGTTGAGTTTGCGAGAGAACAAGATCCGGGAGTTGGGCAGCGCCATCGG
CGCGCTGGTGAACCTAACCACGCTGGACGTTTCGCACAACCATTTGGAAC
ACCTGCCCGAAGACATCGGCAACTGTGTAAACCTCAGCGCTTTGGACCTG
CAGCACAACGAACTGCTGGACATACCCGATAGTATTGGGAATCTGAAATC
CCTGGTGCGGCTGGGCATGAGATACAATCGATTAAGTAGCGTGCCGGCCA
CTTTGAAAAACTGCAAGAGCATGGACGAGTTCAACGTGGAGGGTAATGGC
ATAACCCAGCTGCCAGACGGCATGCTGGCCAGCTTAAGCGGATTAACCAC
CATCACTCTATCGAGAAATCAGTTTGCAAGTTATCCCACTGGCGGTCCAG
CGCAGTTTACCAATGTCTATAGCATTAACTTGGAGCACAACCGGATCGAT
AAGATTCCCTATGGGATCTTCTCGAGGGCCAAGGGTCTCACCAAGTTAAA
CATGAAGGAGAACATGCTGACGGCTTTACCATTAGACATCGGCACCTGGG
TGAACATGGTGGAGCTGAATCTGGCCACAAATGCGCTACAGAAACTGCCC
GATGATATCATGAACCTGCAAAACCTTGAGATACTCATCCTGTCAAACAA
CATGCTCAAGAAGATTCCGAATACAATTGGAAATTTGCGAAAGCTAAGAA
TACTGGACCTGGAGGAGAACCGCATTGAGGTGCTGCCGCACGAGATTGGC
CTGCTGCACGAGCTCCAACGTTTGATCCTGCAAACCAATCAAATCACCAT
GCTGCCGCGTAGCATCGGCCACTTGGGCAACCTGACTCACCTGTCTGTAA
GCGAGAATAACCTGCAGTTCCTGCCCGAGGAGATTGGTTCGCTAGAGAGC
CTTGAGAATCTGTACATCAACCAGAATCCCGGCTTGGAGAAGCTGCCATT
TGAACTGGCTTTGTGTCAAAATCTAAAATATCTGAACATTGACAAGTGCC
CGCTGAGCACTATTCCGCCAGAAATCCAAGCTGGCGGGCCATCGCTGGTG
CTGCAGTGGCTCAAGATGCACTCACCATACCGCCAGATGTGAAAGCTTTC
TAGACCAT
BS23388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sur-8-RF | 1926 | CG5407-PF | 1..1926 | 17..1942 | 9630 | 100 | Plus |
| Sur-8-RE | 2085 | CG5407-PE | 1..1926 | 17..1942 | 9630 | 100 | Plus |
| Sur-8-RB | 1926 | CG5407-PB | 1..1926 | 17..1942 | 9630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sur-8-RF | 2842 | CG5407-RF | 247..2172 | 17..1942 | 9630 | 100 | Plus |
| Sur-8-RE | 4537 | CG5407-RE | 475..2400 | 17..1942 | 9630 | 100 | Plus |
| Sur-8-RB | 4309 | CG5407-RB | 247..2172 | 17..1942 | 9630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17397336..17398782 | 1942..496 | 7235 | 100 | Minus |
| 3R | 32079331 | 3R | 17399016..17399499 | 500..17 | 2420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:55:52 has no hits.
BS23388.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:14 Download gff for
BS23388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sur-8-RB | 221..2145 | 17..1941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:35 Download gff for
BS23388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sur-8-RB | 247..2171 | 17..1941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:24 Download gff for
BS23388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sur-8-RB | 247..2171 | 17..1941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:24 Download gff for
BS23388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17397337..17398780 | 498..1941 | 100 | <- | Minus |
| 3R | 17399019..17399499 | 17..497 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:35 Download gff for
BS23388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13223059..13224502 | 498..1941 | 100 | <- | Minus |
| arm_3R | 13224741..13225221 | 17..497 | 100 | | Minus |
BS23388.pep Sequence
Translation from 16 to 1941
> BS23388.pep
MNLCSSGATASTTSLSSTGQAERSGGVPGGGAEGGGGSGNSGGGGKTSNG
SAEAPTLCFAGGSGTAGAIAGTEELSNANSPANGAGGATGSTGSGQQPTG
SNGHSHLHNENNANMPPETRPKMVTVKHPESNKPKPTTKKSKPIQADQDV
IKALQRCRDEGIKRLDLSKSSITVIPSTVKECVHLTELYLYSNKIGQLPP
EIGCLVSLRNLALNENSLTSLPESLQNCSQLKVLDLRHNKLAEIPPVIYR
LRSLTTLYLRFNRITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNL
TTLDVSHNHLEHLPEDIGNCVNLSALDLQHNELLDIPDSIGNLKSLVRLG
MRYNRLSSVPATLKNCKSMDEFNVEGNGITQLPDGMLASLSGLTTITLSR
NQFASYPTGGPAQFTNVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKENM
LTALPLDIGTWVNMVELNLATNALQKLPDDIMNLQNLEILILSNNMLKKI
PNTIGNLRKLRILDLEENRIEVLPHEIGLLHELQRLILQTNQITMLPRSI
GHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELALC
QNLKYLNIDKCPLSTIPPEIQAGGPSLVLQWLKMHSPYRQM*
BS23388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sur-8-PF | 641 | CG5407-PF | 1..641 | 1..641 | 3291 | 100 | Plus |
| Sur-8-PE | 694 | CG5407-PE | 1..641 | 1..641 | 3291 | 100 | Plus |
| Sur-8-PB | 641 | CG5407-PB | 1..641 | 1..641 | 3291 | 100 | Plus |
| Sur-8-PA | 641 | CG5407-PA | 1..641 | 1..641 | 3291 | 100 | Plus |
| Lap1-PB | 849 | CG10255-PB | 15..398 | 158..567 | 480 | 29.8 | Plus |
