BS23389.complete Sequence
2501 bp assembled on 2011-02-18
GenBank Submission: KX806116
> BS23389.complete
GAAGTTATCAGTCGACATGGTTAACGATAAAAAGCGTCGCTCACGATCGC
GGGAGCGTCACAGGGAGGATCGTCCGGCCGTGGGCAATCCGCGGGATCGA
GAGCGAGAGAGGGATCGTGTGAGGGAACGAGATAGGCAGTTCGATAGGGA
GAAGGAAAGACGCCAACGTCGCTCGCGTTCCCGAGAGGACCGCAACAGGC
GAAGGTCACCCGAACGTCAAAGGCCTAGGGATAATGTCCGAGAAAGGTCA
AGAGAAAGAGGTGGTGGCGCCGGTGGTGGAGGAGGAGGTGGTGCGGAAAA
GAAGGCCAAAATGGATACTGGCGATGCCCCACCCAAACCTTTAATTGTTG
ACGACGAGGAGCAACAGGACGGCAAGGAAGCAAAGGTGAAGAAAGAGCCG
CTTTCGCTGGAGGAACTGCTGGACAAAAAGAAACGCGAGGAGGAAGCCAG
AAGCAAGCCAGTTTTCCTAACCAAGGAGCAAAGAGCCCTGGAGGCCATCA
AGCGACGCCAGGAGGAAGTGGAGCGCCAGCGAGCTGCCCATGATGCTGCC
CGTGAGCAAATGGCTGCCGCCAGCAAGGTCAGTATCTCTATGGGCACGGC
CATGGCATCAGGAGCTCCGCCGCCTGCAATTGTGGCACCGCCACCCAAAC
CGGATCGTCGGGAACGAGGAGGTGGTCGGGATCGAGGCGACAGAATTGAC
AGAGGAGAACGTGGCGATGACAAGCGAGCTGAAGACCTCACCCACAAAGA
CAAGGAAAAGGAATTAGAAGCCATTCGAGAACGCTACCTGGGCATAATCA
AGAAGAAGCGCCGGGTTCGCCGACTCAACGACCGCAAATTTGTTTTTGAT
TGGGATGCTGGAGAAGATACCTCCATTGACTACAACAATCTCTACAAGGA
ACGCCATCATGTGCAATTCTTTGGCAGAGGAAATGTGGCTGGCATCGATA
TCAAAGAACAAAAGCGTACCCAGAGCAAATTCTATGGAGATCTGCTGGAA
AAAAGGCGAACCGAGGCGGAGAAGGAACAGGAGAAAGTGCGACTAAAGAA
GATGAAGCGCAAGGAGGACAAGCAGAAGTGGGACGATCGACATTGGTCCG
AGAAGGAAAATGATGAAATGACTGAACGCGATTGGCGTATCTTCAGGGAG
GACTACAATGTTACAATTAAGGGTGGGAGAATTCCCAATCCCATCCGAAG
TTGGAATGAGTCCGGATTTCCCAAGGAGATCATCGACATTATCGACAAAG
TGGGCTACAAGGAACCAACGCCCATTCAGAGGCAAGCTATACCCATTGGT
TTGCAGAACAGGGATATTATTGGCGTCGCTGAGACCGGTTCCGGTAAAAC
ATTGGCATTCCTCATACCCCTGCTCTCTTGGATTCAGTCCTTGCCCAAGA
TCGAGCGTCTGGAGGATGTGGACCAAGGACCCTATGCCATTATAATGGCT
CCCACGCGTGAATTGGCCCAGCAAATCGAGGAGGAAACAACCAAGTTTGG
ACAACCTTTGGGCATACGAACTGTGGTCGTTGTGGGTGGTTTGTCAAGAG
AGGAGCAGGGCTTCCGCCTGCGATTGGGCTGCGAGATTGTCATTGCTACG
CCAGGTCGTCTCATTGATGTGCTGGAAAATCGGTATTTGGTGCTGAACCA
ATGTACATACATTGTCCTCGATGAAGCCGATCGTATGATAGACATGGGCT
TCGAGCCAGATGTTCAAAAGATCTTGGAGTACATGCCCGTCACCAACCTG
AAGCCCGATACCGAGGAGGCTGAGGACGAAACAAAGCTGATGGAGAACTT
CTACACTAAGAAGAAGTACCGCCAAACCGTGATGTTTACGGCAACGATGC
CTCCGGCTGTGGAAAGATTAGCTCGCACATATCTCCGGCGACCGGCAACG
GTTTACATCGGATCTGTTGGCAAGCCGACAGAGAGAACAGAGCAAATAGT
GTACATGATGGGCGAGAACGACAAGCGCAAGAAGCTTATGGAGATTCTTT
CGAGGAAAATCGATCCACCAGTTATTATCTTTGTTAATCAAAAGAAGGGC
GCCGATGTTTTGGCTAAGGGTCTGGAGAAACTCGGCTACAACTCGTGCAC
ATTGCACGGTGGCAAGGGTCAGGAGCAGAGAGAGTATGCTTTGGCTGCTT
TGAAGTCAGGCGCAAAGGACATCCTGGTGGCCACCGACGTCGCTGGTCGT
GGTATCGACATCAAGGACGTGTCCTTGGTTATTAACTATGACATGGCCAA
GACCATCGAGGATTACACACATCGTATCGGTCGTACGGGTCGTGCCGGCA
AAACCGGTTGTGCCATTTCGTTTGTCACCAAGGACGATAGCGCTTTGTTC
TACGATCTAAAGCAATGTGTGTCTGCAAGTCCTGTCTCGACCTGTCCGCC
GGAGCTAATGAATCACCCGGAAGCGCAGCACAAGCCTGGCACGGTGGTTA
CCAAAAAGCGCAGGGAGGAAAAAATATTCGCCTAAAAGCTTTCTAGACCA
T
BS23389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10333-RA | 2469 | CG10333-PA | 1..2469 | 17..2485 | 12345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10333-RA | 2656 | CG10333-RA | 93..2562 | 17..2486 | 12350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18607147..18609456 | 177..2486 | 11535 | 100 | Plus |
| 2L | 23513712 | 2L | 18606924..18607090 | 17..183 | 835 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 4266..4299 | 327..360 | 116 | 82.4 | Plus |
BS23389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:58 Download gff for
BS23389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10333-RA | 92..2558 | 17..2483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:03 Download gff for
BS23389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10333-RA | 93..2559 | 17..2483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:43 Download gff for
BS23389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10333-RA | 93..2559 | 17..2483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:43 Download gff for
BS23389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18606924..18607090 | 17..183 | 100 | -> | Plus |
| 2L | 18607154..18609453 | 184..2483 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:03 Download gff for
BS23389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18607154..18609453 | 184..2483 | 100 | | Plus |
| arm_2L | 18606924..18607090 | 17..183 | 100 | -> | Plus |
BS23389.pep Sequence
Translation from 16 to 2484
> BS23389.pep
MVNDKKRRSRSRERHREDRPAVGNPRDRERERDRVRERDRQFDREKERRQ
RRSRSREDRNRRRSPERQRPRDNVRERSRERGGGAGGGGGGGAEKKAKMD
TGDAPPKPLIVDDEEQQDGKEAKVKKEPLSLEELLDKKKREEEARSKPVF
LTKEQRALEAIKRRQEEVERQRAAHDAAREQMAAASKVSISMGTAMASGA
PPPAIVAPPPKPDRRERGGGRDRGDRIDRGERGDDKRAEDLTHKDKEKEL
EAIRERYLGIIKKKRRVRRLNDRKFVFDWDAGEDTSIDYNNLYKERHHVQ
FFGRGNVAGIDIKEQKRTQSKFYGDLLEKRRTEAEKEQEKVRLKKMKRKE
DKQKWDDRHWSEKENDEMTERDWRIFREDYNVTIKGGRIPNPIRSWNESG
FPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLI
PLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGI
RTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIV
LDEADRMIDMGFEPDVQKILEYMPVTNLKPDTEEAEDETKLMENFYTKKK
YRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGE
NDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGK
GQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDY
THRIGRTGRAGKTGCAISFVTKDDSALFYDLKQCVSASPVSTCPPELMNH
PEAQHKPGTVVTKKRREEKIFA*
BS23389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10333-PA | 822 | CG10333-PA | 1..822 | 1..822 | 4254 | 100 | Plus |
| CG6227-PA | 1224 | CG6227-PA | 82..879 | 3..788 | 879 | 30.3 | Plus |
| CG10077-PD | 818 | CG10077-PD | 139..536 | 376..799 | 817 | 41.6 | Plus |
| CG10077-PA | 818 | CG10077-PA | 139..536 | 376..799 | 817 | 41.6 | Plus |
| Rm62-PH | 575 | CG10279-PH | 120..495 | 376..775 | 739 | 39.9 | Plus |
| CG6227-PA | 1224 | CG6227-PA | 7..207 | 26..239 | 162 | 31.7 | Plus |
