BS23390.complete Sequence
506 bp assembled on 2011-01-25
GenBank Submission: KX803858
> BS23390.complete
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGTAGTCAT
TTCGAAAACGCTAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCGATGCT
CCGCCCATATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGCATCGA
CGCTTCTGCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCGACGCC
ATCGAAGGCGGATCCATCGACGGCCTCGTCCAAGAAATAAAAGCTTTCTA
GACCAT
BS23390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RG | 474 | CG6584-PG | 1..474 | 17..490 | 2370 | 100 | Plus |
| SelR-RJ | 579 | CG6584-PJ | 127..579 | 17..490 | 2020 | 95.6 | Plus |
| SelR-RH | 453 | CG6584-PH | 1..453 | 17..490 | 2020 | 95.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RG | 2298 | CG6584-RG | 261..734 | 17..490 | 2370 | 100 | Plus |
| SelR-RJ | 2392 | CG6584-RJ | 376..828 | 17..490 | 2020 | 95.6 | Plus |
| SelR-RH | 2277 | CG6584-RH | 261..713 | 17..490 | 2020 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10865451..10865650 | 490..291 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 10866529..10866698 | 293..124 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:33:33 has no hits.
BS23390.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:04 Download gff for
BS23390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RG | 276..740 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:55 Download gff for
BS23390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RG | 261..725 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:10 Download gff for
BS23390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RG | 261..725 | 17..481 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:10 Download gff for
BS23390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10865460..10865647 | 294..481 | 100 | <- | Minus |
| 3R | 10866529..10866693 | 129..293 | 100 | <- | Minus |
| 3R | 10866809..10866920 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:55 Download gff for
BS23390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6691182..6691369 | 294..481 | 100 | <- | Minus |
| arm_3R | 6692251..6692415 | 129..293 | 100 | <- | Minus |
| arm_3R | 6692531..6692642 | 17..128 | 100 | | Minus |
BS23390.pep Sequence
Translation from 16 to 489
> BS23390.pep
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPVVISKTLG
MVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADP
STASSKK*
BS23390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-PG | 157 | CG6584-PG | 1..157 | 1..157 | 847 | 100 | Plus |
| SelR-PH | 150 | CG6584-PH | 1..150 | 1..157 | 799 | 95.5 | Plus |
| SelR-PJ | 192 | CG6584-PJ | 43..192 | 1..157 | 799 | 95.5 | Plus |
| SelR-PI | 155 | CG6584-PI | 1..141 | 1..154 | 671 | 81.8 | Plus |
| SelR-PA | 155 | CG6584-PA | 1..141 | 1..154 | 671 | 81.8 | Plus |
