Clone BS23391 Report

Search the DGRC for BS23391

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:233
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG41128-RB
Protein status:BS23391.pep: gold
Sequenced Size:251

Clone Sequence Records

BS23391.complete Sequence

251 bp assembled on 2011-01-25

GenBank Submission: KX805357

> BS23391.complete
GAAGTTATCAGTCGACATGACTTCTCGCGATAATATTTTCGAGGAAAAAA
TATGCAATAGATTAGATCATTGCGTTTCTGATGTATTAATTAAAGGATGT
GGAGGCGTAATTATTGGATCTGCTGTATCTTTCTTAATTTTAAAGAGACG
AGCATGGCCTGTATGGCTCGGCGCTGGATTTGGAATGGGCATCGCTTATA
GGACGTGTGAAAAGGATTTAAATTCTTTAAAATAAAAGCTTTCTAGACCA
T

BS23391.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG41128-RB 219 CG41128-PB 1..219 17..235 1095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG41128-RB 364 CG41128-RB 96..315 17..236 1100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 3752167..3752304 99..236 690 100 Plus
3R 32079331 3R 3750458..3750542 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:33:37 has no hits.

BS23391.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:04 Download gff for BS23391.complete
Subject Subject Range Query Range Percent Splice Strand
CG41128-RB 53..269 17..233 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:57 Download gff for BS23391.complete
Subject Subject Range Query Range Percent Splice Strand
CG41128-RB 53..269 17..233 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:13 Download gff for BS23391.complete
Subject Subject Range Query Range Percent Splice Strand
CG41128-RB 96..312 17..233 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:13 Download gff for BS23391.complete
Subject Subject Range Query Range Percent Splice Strand
3R 3750458..3750539 17..98 100 -> Plus
3R 3752167..3752301 99..233 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:57 Download gff for BS23391.complete
Subject Subject Range Query Range Percent Splice Strand
3RHet 1806580..1806714 99..233 100 <- Minus
3RHet 1808342..1808423 17..98 100   Minus

BS23391.pep Sequence

Translation from 16 to 234

> BS23391.pep
MTSRDNIFEEKICNRLDHCVSDVLIKGCGGVIIGSAVSFLILKRRAWPVW
LGAGFGMGIAYRTCEKDLNSLK*

BS23391.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG41128-PB 72 CG41128-PB 1..72 1..72 385 100 Plus
CG12479-PA 74 CG12479-PA 6..69 9..72 218 54.7 Plus
CG13564-PA 81 CG13564-PA 27..79 17..69 141 45.3 Plus