BS23392.complete Sequence
1172 bp assembled on 2011-01-25
GenBank Submission: KX803098
> BS23392.complete
GAAGTTATCAGTCGACATGGGTCCCAACGGCACGGTACAGAATCAGAACC
AACAGGGCGGCGAGCAGTTGTCCAAGACAAATCTCTACATTCGCGGTCTG
CAGCAGGGCACAACCGACAAGGATCTAGTTAATATGTGTGCACAATACGG
AACAATTATATCAACCAAGGCTATTTTAGATAAAACAACAAACAAATGTA
AAGGTTACGGCTTCGTCGACTTCGAGCAGCCAGCCTTCGCCGAGTGCGCC
GTAAAAGGATTGCAGGGGAAGGGCGTGCAAGCTCAGATGGCCAAAGTGGG
TATCTGGGTGCTTCATAGGCCGGCCATTCAACAGGAACAGGATCCCACAA
ATTTGTATATTGCAAATTTGCCGCCCCACTTCAAAGAAACTGATCTGGAG
GCAATGCTATCGAAATACGGACAAGTTGTTTCGACCAGAATATTGCGTGA
TCAGCAGATGAACTCCAAGGGCGTTGGCTTTGCCCGCATGGAGAGTCGCG
AGAAGTGCGAGCAAATCATTCAGATGTTCAATGGTAACACAATACCGGGT
GCCAAAGATCCCCTGCTGGTTAAGTTTGCCGATGGCGGACCGAAAAAGAA
GAATCTCTTCAAGACGCCCGATCCGAATGCGCGTGCGTGGCGTGACGTCT
CCGCGGAGGGGATTCCCGTGGCCTACGACCCCACAATGCAGCAGAATGGA
GTCAGCGTGAACGTGGGCACACCCATCGGAGTGCCCTACTCCCGCTTCAG
CGCCCCCCAGGTGGGTGGCTATCCAGTGGCCGGCTCCCAATGGATTCCGG
GTTACATGATGACTCAGGTAGATGATCAGACTTCGTATTCTCCACAGTAC
ATGCAGATGGCAGCTGCCCCTCCGCTGGGAGTAACCTCATACAAACCGGA
GGCGGTTAACCAGGTGCAGCCCCGTGGCATCTCGATGATGGTTAGCGGTG
ATACGGGCGTGCCATATGGAACAATGATGCCTCAGTTGGCCACCCTGCAG
ATTGGCAACTCTTATATTAGTCCAACTTATCCATATTATGCACCACCACC
AACTATTATACCAACAATGCCAATGACAGATTCCGAACAGGCTAGCACAG
CTGCATCACCCGACGAGGCATACACACAGTATCCACATCAAGCCGCTCCC
AAATAGAAGCTTTCTAGACCAT
BS23392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shep-RE | 1140 | CG32423-PE | 1..1140 | 17..1156 | 5700 | 100 | Plus |
| shep-RG | 1140 | CG32423-PG | 1..1140 | 17..1156 | 5700 | 100 | Plus |
| shep-RI | 1134 | CG32423-PI | 1..1134 | 17..1156 | 5575 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shep-RE | 2776 | CG32423-RE | 708..1849 | 15..1156 | 5710 | 100 | Plus |
| shep-RG | 2541 | CG32423-RG | 473..1614 | 15..1156 | 5710 | 100 | Plus |
| shep-RI | 4661 | CG32423-RI | 708..1843 | 15..1156 | 5585 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5163345..5163704 | 829..470 | 1800 | 100 | Minus |
| 3L | 28110227 | 3L | 5162967..5163151 | 1012..828 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 5162467..5162610 | 1156..1013 | 720 | 100 | Minus |
| 3L | 28110227 | 3L | 5163833..5163975 | 471..329 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 5170187..5170316 | 144..15 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 5166935..5167061 | 328..202 | 635 | 100 | Minus |
| 3L | 28110227 | 3L | 5168242..5168302 | 205..145 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:33:42 has no hits.
BS23392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:05 Download gff for
BS23392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shep-RE | 706..1839 | 17..1150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:59 Download gff for
BS23392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shep-RG | 475..1608 | 17..1150 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:15 Download gff for
BS23392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shep-RG | 475..1608 | 17..1150 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:15 Download gff for
BS23392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5162473..5162610 | 1013..1150 | 100 | <- | Minus |
| 3L | 5162967..5163149 | 830..1012 | 100 | <- | Minus |
| 3L | 5163345..5163703 | 471..829 | 100 | <- | Minus |
| 3L | 5163834..5163975 | 329..470 | 100 | <- | Minus |
| 3L | 5166935..5167059 | 204..328 | 100 | <- | Minus |
| 3L | 5168244..5168302 | 145..203 | 100 | <- | Minus |
| 3L | 5170187..5170314 | 17..144 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:59 Download gff for
BS23392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5155573..5155710 | 1013..1150 | 100 | <- | Minus |
| arm_3L | 5156067..5156249 | 830..1012 | 100 | <- | Minus |
| arm_3L | 5156445..5156803 | 471..829 | 100 | <- | Minus |
| arm_3L | 5156934..5157075 | 329..470 | 100 | <- | Minus |
| arm_3L | 5160035..5160159 | 204..328 | 100 | <- | Minus |
| arm_3L | 5161344..5161402 | 145..203 | 100 | <- | Minus |
| arm_3L | 5163287..5163414 | 17..144 | 100 | | Minus |
BS23392.pep Sequence
Translation from 16 to 1155
> BS23392.pep
MGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIIST
KAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLH
RPAIQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNS
KGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKT
PDPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAPQVG
GYPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQV
QPRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPPTIIPT
MPMTDSEQASTAASPDEAYTQYPHQAAPK*
BS23392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shep-PE | 379 | CG32423-PE | 1..379 | 1..379 | 2009 | 100 | Plus |
| shep-PG | 379 | CG32423-PG | 1..379 | 1..379 | 2009 | 100 | Plus |
| shep-PI | 377 | CG32423-PI | 1..377 | 1..379 | 1986 | 99.5 | Plus |
| shep-PB | 499 | CG32423-PB | 116..499 | 1..379 | 1967 | 97.7 | Plus |
| shep-PD | 499 | CG32423-PD | 116..499 | 1..379 | 1967 | 97.7 | Plus |
