BS23395.complete Sequence
2591 bp assembled on 2011-07-18
GenBank Submission: KX803658
> BS23395.complete
GAAGTTATCAGTCGACATGGGTTCCCTATTCCGCAGCGAGGAAATGGCGC
TGTGCCAGCTGTTCCTGCAGAGCGAGGCGGCCTACGCCTGCGTCTCCGAG
TTGGGAGAACTGGGATTGGTCCAGTTCCGAGATCTCAATCCCGATGTCAA
CGCTTTCCAGAGGAAGTTCGTCAACGAGGTGCGCCGCTGCGATGAGATGG
AGCGCAAGCTGCGTTACCTGGAGAAGGAGATCAAGAAGGACGGCATCCCC
ATGTTGGACACCGGGGAGAGTCCCGAGGCCCCGCAGCCCCGCGAGATGAT
CGACCTGGAGGCCACCTTTGAGAAGCTGGAGAACGAGCTGAGGGAGGTGA
ATCAGAACGCCGAGGCCCTGAAGCGCAACTTTCTGGAGCTGACCGAGCTG
AAGCATATTTTGCGCAAAACCCAAGTGTTCTTCGATGAGCAAGAAGGCGG
CGTAAACCAAACGACCGAGTCGATGACCCGCGCCTTGATCACGGACGAGG
CGCGCACCGCTGGTGCCTCCATGGGTCCCGTACAGCTCGGTTACATGGAG
AAATCAAACGAACGTGAGGATTATCTTCCATGCTTCGTGGCTGGCGTCAT
CCTGAGGGAGCGACTGCCGGCCTTCGAGCGGATGTTGTGGCGCGCCTGCA
GGGGTAACGTCTTCCTGCGACAGGCGATGATTGAGACGCCGCTGGAGGAT
CCCACCAATGGCGACCAGGTGCACAAGTCTGTGTTTATAATCTTCTTCCA
GGGTGACCAGCTGAAGACGCGCGTCAAGAAGATCTGCGAGGGCTTCCGGG
CCACGCTCTATCCTTGCCCTGAAGCTCCAGCCGATCGGCGAGAGATGGCC
ATGGGTGTGATGACTCGCATCGAAGATCTGAACACCGTGCTCGGCCAGAC
GCAGGACCATCGCCATCGTGTGCTGGTCGCTGCGGCCAAGAATCTTAAGA
ACTGGTTCGTCAAGGTGCGCAAGATAAAGGCCATCTACCATACGCTGAAT
CTCTTCAATCTGGACGTGACCCAGAAGTGTCTGATCGCCGAGTGCTGGGT
ACCGCTGCTGGACATTGAAACCATCCAGCTGGCCTTGCGCCGCGGAACCG
AAAGATCGGGATCGTCGGTGCCGCCAATTCTCAACCGGATGCAGACGTTC
GAGAATCCACCGACCTACAATCGAACGAATAAGTTTACCAAGGCCTTTCA
GGCATTGATCGATGCCTATGGCGTGGCCAGCTATCGGGAGATGAATCCGG
CACCCTACACGATCATCACCTTCCCCTTCCTGTTCGCCGTGATGTTTGGA
GATTTGGGCCACGGAGCTATCATGGCGCTCTTTGGTCTCTGGATGATTCG
AAAGGAGAAGGGACTGGCGGCTCAGAAGACGGACAACGAGATCTGGAACA
TATTCTTTGGCGGACGGTACATCATCTTCCTCATGGGCGTCTTCTCCATG
TACACGGGTCTTATATACAACGATATATTCTCCAAGTCGCTGAATATCTT
TGGATCGCATTGGCACTTATCCTACAACAAGTCCACCGTGATGGAGAACA
AGTTCCTGCAGTTGAGCCCGAAAGGCGACTACGAGGGCGCTCCGTATCCG
TTCGGCATGGATCCCATTTGGCAGGTGGCGGGAGCCAATAAGATCATCTT
CCACAACGCTTACAAGATGAAGATCTCGATCATTTTCGGTGTTATTCACA
TGATCTTCGGTGTGGTGATGAGCTGGCACAATCATACGTATTTCAGGAAC
AGGATCTCCCTGCTCTACGAGTTCATTCCCCAGCTGGTCTTCCTGCTGCT
GCTTTTCTTCTACATGGTTTTGTTGATGTTCATCAAGTGGATCAAGTTTG
CCGCCACCAATGATAAGCCCTACTCCGAAGCCTGTGCGCCTTCAATCCTG
ATCACCTTTATCGACATGGTGCTTTTTAACACGCCCAAGCCACCTCCGGA
GAACTGTGAAACCTATATGTTCATGGGCCAGCACTTTATCCAGGTGTTAT
TCGTCCTGGTTGCCGTCGGCTGCATTCCCGTAATGTTGCTGGCCAAGCCG
CTGCTCATCATGCAGGCCCGCAAGCAGGCGAACGAAGAGGTACAGCCCAT
TGCAGGAGCAACTTCAGATGCAGAAGCCGGCGGCGTGTCCAATAGCGGCT
CACACGGTGGTGGCGGTGGCCATGAGGAGGAAGAGGAGCTCTCTGAGATC
TTCATTCACCAGAGCATCCACACCATCGAGTACGTCCTAGGTTCGGTATC
CCACACCGCTTCCTATCTGCGATTGTGGGCGCTTTCCTTGGCCCATGCCC
AGTTGGCTGAGGTGCTGTGGACCATGGTCCTATCGATTGGCTTGAAGCAG
GAAGGGCCGGTGGGTGGCATTGTATTGACCTGCGTGTTTGCCTTCTGGGC
CATTCTCACCGTTGGCATTCTGGTACTCATGGAGGGCTTGTCTGCCTTCC
TGCACACCCTGCGTCTCCATTGGGTCGAGTTCCAGAGCAAGTTCTACAAG
GGCCAGGGTTACGCCTTCCAACCCTTCTCGTTTGATGCCATCATAGAAAA
CGGAGCTGCCGCCGCCGAGGAGTAAAAGCTTTCTAGACCAT
BS23395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RJ | 2559 | CG1709-PJ | 1..2559 | 17..2575 | 12780 | 100 | Plus |
| Vha100-1-RI | 2559 | CG1709-PI | 1..2559 | 17..2575 | 12780 | 100 | Plus |
| Vha100-1-RG | 2553 | CG1709-PG | 1..2553 | 17..2575 | 12655 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RJ | 2950 | CG1709-RJ | 103..2662 | 17..2576 | 12785 | 100 | Plus |
| Vha100-1-RI | 3052 | CG1709-RI | 205..2764 | 17..2576 | 12785 | 100 | Plus |
| Vha100-1-RG | 2944 | CG1709-RG | 103..2656 | 17..2576 | 12660 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29135262..29136417 | 710..1865 | 5765 | 99.9 | Plus |
| 3R | 32079331 | 3R | 29136482..29136700 | 1866..2084 | 1095 | 100 | Plus |
| 3R | 32079331 | 3R | 29137074..29137286 | 2088..2300 | 1065 | 100 | Plus |
| 3R | 32079331 | 3R | 29132126..29132303 | 134..311 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 29137352..29137524 | 2301..2473 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 29132374..29132504 | 309..439 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 29135048..29135176 | 582..710 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 29131709..29131825 | 17..133 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 29137579..29137687 | 2468..2576 | 530 | 99.1 | Plus |
| 3R | 32079331 | 3R | 29133859..29133965 | 438..544 | 520 | 99.1 | Plus |
| 2L | 23513712 | 2L | 11741549..11741776 | 15..242 | 330 | 76.3 | Plus |
| 3R | 32079331 | 3R | 18393092..18393190 | 247..149 | 315 | 87.9 | Minus |
| 3R | 32079331 | 3R | 18390664..18390771 | 2527..2420 | 285 | 84.3 | Minus |
| 2L | 23513712 | 2L | 11742868..11742996 | 1388..1516 | 270 | 80.6 | Plus |
| 2R | 25286936 | 2R | 18909062..18909162 | 2495..2395 | 250 | 83.2 | Minus |
| 3R | 32079331 | 3R | 18392349..18392428 | 1050..971 | 235 | 86.2 | Minus |
| 3R | 32079331 | 3R | 18388331..18388441 | 1315..1205 | 225 | 80.2 | Minus |
| 3R | 32079331 | 3R | 18391886..18392011 | 1513..1388 | 225 | 78.6 | Minus |
| 3R | 32079331 | 3R | 29134556..29134598 | 540..582 | 215 | 100 | Plus |
| 2R | 25286936 | 2R | 18910296..18910374 | 1315..1237 | 215 | 84.8 | Minus |
| 3R | 32079331 | 3R | 18391691..18391807 | 1714..1595 | 205 | 80 | Minus |
| 2L | 23513712 | 2L | 11743624..11743709 | 2195..2280 | 205 | 82.6 | Plus |
| 3R | 32079331 | 3R | 18392085..18392193 | 1314..1206 | 185 | 78 | Minus |
Blast to na_te.dros performed 2014-11-26 21:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6819..6865 | 1830..1784 | 127 | 74.5 | Minus |
BS23395.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 16:37:10 Download gff for
BS23395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RJ | 246..2802 | 17..2573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:48 Download gff for
BS23395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RI | 205..2761 | 17..2573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:05 Download gff for
BS23395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RI | 205..2761 | 17..2573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:05 Download gff for
BS23395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29131709..29131825 | 17..133 | 100 | -> | Plus |
| 3R | 29132126..29132302 | 134..310 | 100 | -> | Plus |
| 3R | 29132376..29132504 | 311..439 | 100 | -> | Plus |
| 3R | 29133861..29133961 | 440..540 | 100 | -> | Plus |
| 3R | 29134557..29134598 | 541..582 | 100 | -> | Plus |
| 3R | 29135049..29135175 | 583..709 | 100 | -> | Plus |
| 3R | 29135262..29136417 | 710..1865 | 99 | -> | Plus |
| 3R | 29136482..29136703 | 1866..2089 | 98 | -> | Plus |
| 3R | 29137076..29137286 | 2090..2300 | 100 | -> | Plus |
| 3R | 29137352..29137523 | 2301..2472 | 100 | -> | Plus |
| 3R | 29137584..29137684 | 2473..2573 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:48 Download gff for
BS23395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24957431..24957547 | 17..133 | 100 | -> | Plus |
| arm_3R | 24957848..24958024 | 134..310 | 100 | -> | Plus |
| arm_3R | 24958098..24958226 | 311..439 | 100 | -> | Plus |
| arm_3R | 24959583..24959683 | 440..540 | 100 | -> | Plus |
| arm_3R | 24960279..24960320 | 541..582 | 100 | -> | Plus |
| arm_3R | 24960771..24960897 | 583..709 | 100 | -> | Plus |
| arm_3R | 24960984..24962139 | 710..1865 | 99 | -> | Plus |
| arm_3R | 24962204..24962425 | 1866..2089 | 98 | -> | Plus |
| arm_3R | 24962798..24963008 | 2090..2300 | 100 | -> | Plus |
| arm_3R | 24963074..24963245 | 2301..2472 | 100 | -> | Plus |
| arm_3R | 24963306..24963406 | 2473..2573 | 100 | | Plus |
BS23395.pep Sequence
Translation from 16 to 2574
> BS23395.pep
MGSLFRSEEMALCQLFLQSEAAYACVSELGELGLVQFRDLNPDVNAFQRK
FVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLEAT
FEKLENELREVNQNAEALKRNFLELTELKHILRKTQVFFDEQEGGVNQTT
ESMTRALITDEARTAGASMGPVQLGYMEKSNEREDYLPCFVAGVILRERL
PAFERMLWRACRGNVFLRQAMIETPLEDPTNGDQVHKSVFIIFFQGDQLK
TRVKKICEGFRATLYPCPEAPADRREMAMGVMTRIEDLNTVLGQTQDHRH
RVLVAAAKNLKNWFVKVRKIKAIYHTLNLFNLDVTQKCLIAECWVPLLDI
ETIQLALRRGTERSGSSVPPILNRMQTFENPPTYNRTNKFTKAFQALIDA
YGVASYREMNPAPYTIITFPFLFAVMFGDLGHGAIMALFGLWMIRKEKGL
AAQKTDNEIWNIFFGGRYIIFLMGVFSMYTGLIYNDIFSKSLNIFGSHWH
LSYNKSTVMENKFLQLSPKGDYEGAPYPFGMDPIWQVAGANKIIFHNAYK
MKISIIFGVIHMIFGVVMSWHNHTYFRNRISLLYEFIPQLVFLLLLFFYM
VLLMFIKWIKFAATNDKPYSEACAPSILITFIDMVLFNTPKPPPENCETY
MFMGQHFIQVLFVLVAVGCIPVMLLAKPLLIMQARKQANEEVQPIAGATS
DAEAGGVSNSGSHGGGGGHEEEEELSEIFIHQSIHTIEYVLGSVSHTASY
LRLWALSLAHAQLAEVLWTMVLSIGLKQEGPVGGIVLTCVFAFWAILTVG
ILVLMEGLSAFLHTLRLHWVEFQSKFYKGQGYAFQPFSFDAIIENGAAAA
EE*
BS23395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-PJ | 852 | CG1709-PJ | 1..852 | 1..852 | 4453 | 100 | Plus |
| Vha100-1-PI | 852 | CG1709-PI | 1..852 | 1..852 | 4453 | 100 | Plus |
| Vha100-1-PG | 850 | CG1709-PG | 1..850 | 1..852 | 4430 | 99.8 | Plus |
| Vha100-1-PK | 836 | CG1709-PK | 1..836 | 1..852 | 4325 | 98.1 | Plus |
| Vha100-1-PD | 836 | CG1709-PD | 1..836 | 1..852 | 4325 | 98.1 | Plus |
