Clone BS23423 Report

Search the DGRC for BS23423

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:234
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptjp-RC
Protein status:BS23423.pep: full length peptide match
Sequenced Size:422

Clone Sequence Records

BS23423.complete Sequence

422 bp assembled on 2012-04-25

GenBank Submission: KX800469

> BS23423.complete
GAAGTTATCAGTCGACATGGACTGGTATCCGGAGGAGGATGAGGAGGACC
TCATGTTCTCACCGGCTTTGTTGGCCAGAAGAGCCAGCGAAAGCTGGATC
GTTGAGCCCCCCGTCGAGTCGGTGCCCATCAATGTGACGCTGCAGCGAAA
GAAGTCCATGCCCGATTTCCAGGAACTGCCGCGAGCCACGGAGGCCATGA
GCCGGGAGGAGGTGTCCGCCTTGGGTTCCGCCCGACGGGAGGCAGTGCGT
CGCCAGATCGAGGTCAACGAGCGGCTCAAGGCAAATCCCTTGCTGTATTT
GGTCAGTCCACAGGTTAAGGACTGGTTTGTGCGCCAGCAGCTGATGCTGC
TCGTCCTGATTTTCAACGTGGCGTTGGCGCTTCTATTTGTCTACATGCTC
ACCTAGAAGCTTTCTAGACCAT

BS23423.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
jp-RC 390 CG4405-PC 1..390 17..406 1935 99.7 Plus
jp-RE 3165 CG4405-PE 2876..3165 117..406 1450 100 Plus
jp-RD 3165 CG4405-PD 2876..3165 117..406 1450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
jp-RC 2148 CG4405-RC 437..827 16..406 1940 99.7 Plus
jp-RE 4976 CG4405-RE 3366..3655 117..406 1450 100 Plus
jp-RD 4284 CG4405-RD 3430..3719 117..406 1450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9550203..9550406 320..117 1020 100 Minus
2L 23513712 2L 9550479..9550581 118..16 500 99 Minus
2L 23513712 2L 9549579..9549667 406..318 445 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:21:04 has no hits.

BS23423.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:56 Download gff for BS23423.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 438..827 17..406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:02 Download gff for BS23423.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 438..827 17..406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:26 Download gff for BS23423.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 438..827 17..406 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:26 Download gff for BS23423.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9549579..9549665 320..406 100 <- Minus
2L 9550204..9550404 119..319 100 <- Minus
2L 9550479..9550580 17..118 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:02 Download gff for BS23423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9549579..9549665 320..406 100 <- Minus
arm_2L 9550204..9550404 119..319 100 <- Minus
arm_2L 9550479..9550580 17..118 99   Minus

BS23423.pep Sequence

Translation from 16 to 405

> BS23423.pep
MDWYPEEDEEDLMFSPALLARRASESWIVEPPVESVPINVTLQRKKSMPD
FQELPRATEAMSREEVSALGSARREAVRRQIEVNERLKANPLLYLVSPQV
KDWFVRQQLMLLVLIFNVALALLFVYMLT*

BS23423.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
jp-PC 129 CG4405-PC 1..129 1..129 647 100 Plus
jp-PE 1054 CG4405-PE 958..1054 33..129 465 97.9 Plus
jp-PD 1054 CG4405-PD 958..1054 33..129 465 97.9 Plus
jp-PA 1054 CG4405-PA 958..1054 33..129 465 97.9 Plus
jp-PB 1054 CG4405-PB 958..1054 33..129 465 97.9 Plus