BS23424.complete Sequence
830 bp assembled on 2011-01-25
GenBank Submission: KX801093
> BS23424.complete
GAAGTTATCAGTCGACATGGGAACCATGACCAAGGACTACGACTATCTGC
TAAAGGTTCTACTGGTGGGCGACAGCGATGTGGGCAAGCACGAGATTCTC
TCAAACCTGGAGGATCCCTCCACGGAGAGTCCCTTCTGCAGTGGGAACGA
CTGCACATCTCATATCCTTCAAACGGTAGCCTACAAGACGACCACCATCC
TGCTGGAGGGCAAGCGGGTGAAGCTGCAGCTGTGGGACACCTCCGGCCAG
GGACGCTTCTGCACGATCATTCGCTCCTATTCGCGCGGCGCCCAGGGCAT
CATCCTCGTCTACGACATCACCAACAAGTGGAGCTTCGACGGTATCGATC
GGTGGCTCAAGGAGGTCGACGAGCACGCCCCAGGAATTCCGAAGGTTCTT
GTCGGGAATCGCCTGCACTTGGCCTTCAAGCGACAGGTGGCGGCCAAACA
GGCCGAGACCTACGCCAGCCGCAACAATATGTCCTGCTTCGAGATATCGC
CTCTCTGCAACTTCAACATCCGCGAGTCCTTTTGCGAACTGGCGCGGATG
GCCCTGCATCGCAACGGCATGGAGCACATCTGGCGCAGCAATAAGGTGCT
GTCGCTTCAGGAATTGTGCTGCAGGACAATTGTGCGAAGGACGAGCGTGT
ATGCGATCGATTCGCTGCCGCTGCCGCCGTCGGTGAAGTCGACGCTCAAG
TCATACGCGCTGACCACGTCCCAGTGCTTCAATTCACTGACCCAGAGCTC
CAAGAGCAAGAACCGCTGCAAGACGCCGACGAGCAGCAGTCGGAATAGCT
GTGCGATCGCGTGAAAGCTTTCTAGACCAT
BS23424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-RB | 798 | CG1900-PB | 1..798 | 17..814 | 3990 | 100 | Plus |
| Rab40-RC | 768 | CG1900-PC | 133..768 | 179..814 | 3180 | 100 | Plus |
| Rab40-RA | 768 | CG1900-PA | 133..768 | 179..814 | 3180 | 100 | Plus |
| Rab40-RC | 768 | CG1900-PC | 1..133 | 17..149 | 665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-RB | 1618 | CG1900-RB | 249..1048 | 15..814 | 4000 | 100 | Plus |
| Rab40-RC | 1449 | CG1900-RC | 244..879 | 179..814 | 3180 | 100 | Plus |
| Rab40-RA | 1588 | CG1900-RA | 383..1018 | 179..814 | 3180 | 100 | Plus |
| Rab40-RC | 1449 | CG1900-RC | 110..244 | 15..149 | 675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12460989..12461213 | 596..372 | 1125 | 100 | Minus |
| X | 23542271 | X | 12461456..12461680 | 373..149 | 1125 | 100 | Minus |
| X | 23542271 | X | 12460366..12460584 | 814..596 | 1095 | 100 | Minus |
| X | 23542271 | X | 12461736..12461870 | 149..15 | 675 | 100 | Minus |
| X | 23542271 | X | 20158046..20158165 | 325..206 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:34:09 has no hits.
BS23424.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:09 Download gff for
BS23424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RB | 247..1043 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:10 Download gff for
BS23424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RB | 251..1047 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:31 Download gff for
BS23424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab40-RB | 251..1047 | 17..813 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:31 Download gff for
BS23424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12460367..12460583 | 597..813 | 100 | <- | Minus |
| X | 12460989..12461211 | 374..596 | 100 | <- | Minus |
| X | 12461456..12461679 | 150..373 | 100 | <- | Minus |
| X | 12461736..12461868 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:10 Download gff for
BS23424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12355769..12355901 | 17..149 | 100 | | Minus |
| arm_X | 12354400..12354616 | 597..813 | 100 | <- | Minus |
| arm_X | 12355022..12355244 | 374..596 | 100 | <- | Minus |
| arm_X | 12355489..12355712 | 150..373 | 100 | <- | Minus |
BS23424.pep Sequence
Translation from 16 to 813
> BS23424.pep
MGTMTKDYDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHI
LQTVAYKTTTILLEGKRVKLQLWDTSGQGRFCTIIRSYSRGAQGIILVYD
ITNKWSFDGIDRWLKEVDEHAPGIPKVLVGNRLHLAFKRQVAAKQAETYA
SRNNMSCFEISPLCNFNIRESFCELARMALHRNGMEHIWRSNKVLSLQEL
CCRTIVRRTSVYAIDSLPLPPSVKSTLKSYALTTSQCFNSLTQSSKSKNR
CKTPTSSSRNSCAIA*
BS23424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab40-PB | 265 | CG1900-PB | 1..265 | 1..265 | 1390 | 100 | Plus |
| Rab40-PC | 255 | CG1900-PC | 1..255 | 1..265 | 1315 | 96.2 | Plus |
| Rab40-PA | 255 | CG1900-PA | 1..255 | 1..265 | 1315 | 96.2 | Plus |
| Rab10-PA | 204 | CG17060-PA | 4..187 | 6..195 | 358 | 42.2 | Plus |
| Rab8-PC | 207 | CG8287-PC | 1..166 | 4..176 | 331 | 41.4 | Plus |
