BS23463.complete Sequence
1814 bp assembled on 2012-05-15
GenBank Submission: KX800376
> BS23463.complete
GAAGTTATCAGTCGACATGAGGCAAATAAAACTCTTAGTCTGGTTACTGG
TCGTCGGAGTGGTTTCCTCAACGGAACAACTTCAATTCCTAAAGAATTTC
CTAGAAGCGGTGCACAAAGAGAGATCTATTTCAACTATTCTTCTTATTCA
AAGGAAAGTTCATAAAAATGATTTTCTGCACGGACTTTACCCCATATTCT
GGCCAATAATTTGCTTGGACGAAACTAAAAGAGTTGAACTAGTAAACAAT
TTTAACAAGGACTTCCTGGCACTTGTTTATATGGAATCTGAGGCGGATAC
ATTGCTACTGTCGGCATTGGCTGCCGATTTAAATCATATTAGAGACGCAA
GGATTATGATCTGGTTACAGATGAGCCCTTCGGAAAATTTTCTTGATCGT
ATTGTTTTTCAGGCATCTAAGCAGAAGTTCCTTAATCTCGTGGTAATAGA
AAATACATTAAAAACTCGACGATTTTATCCATTTCCCCAGCCAAAAGTTC
AAGTTATCGACAAACCTTTCGAGGAAAAAGAAATATATCCCGCTCTTTGG
CGCAACTTCATGGGCAAAAATGCAATAGCTGTGCCCGACTTGGTGCCACC
ACGGAGTTTTAATTCTTTTGATCCAAAAACCGGTCATAGAAGGGAAAGTG
GATCTATCTACAATGTCTTCAAAGCCTTTACGCAGAGATACAATATTACC
ATGCTCCTGAAATGGCCGCTCATCAGAAATACTACCCAAGAGGAAATTAT
CGGAAAAAGTGTTCGTGGAGAGATAGACTTACCAATAACCGGACAGTTGA
TTAGCTTTAGACACCCAAACGGAAGTAGGTCTCAGCCTCTTTTAGGAATG
ACAGCCCTATCCATTGCTGTGCCTTGCGGCCCCGAGTTGCCAATGTTTGA
TCGGTTCTTTTTGTTCTACGGATTGGCTACACCCATCACCATAACTGGAT
ACTATGTCCTGCTAAACACCATAGAGATCATACTTGGAACTCTGAGCGAT
CGAATCAAACGCCATCCAAGACGTAAGAAGATCCTGAATCTGGTGCTTAA
TCTACGGGTATTTAGTTGCATTCTGTCCCTGCCCACTCCACAAGGGAATC
GACTTAGATCCGTCAAGGGTCAGCTGACCATGGTGATGAGTATCACAGGC
CTAATTCTCTCCTGCATTGTGGCAGCACAAACGAGTACTATTCTCACCAT
GAAGCCCCAATACCGGCATATCAAGAACTTTCAGGAACTGAGCGACAGTA
ACATAACCGTGGTATGTAACCACCTTAACTACTTGACCATCAAGCAGCAA
ATGGACCCCAAGTTTATGGCCAAGTTCATGCAGAACATCTGGATAGTGAA
CAGCATTGAGCAGATGAAGATGATCTTTGATTTGAATACGAGCTATGCCT
ACCAGACATTCTCCTACAAAAAGGACCCATTTACACTGCTTCAAATGCAC
ACTACCCGTAAGGCGTTTTGCAGGACCCCGGGCTTAGATTTGGTCAGTGG
ACTCGCTTATACTGCGGTTCTCGAAAAGAATTCGATCTACGCACTGGCCT
TGCAGGACTACACCCTAAAGGCTTTTAGTGCCGGTCTTGTCTATTACTGG
GCGGAAGAGTCTATTCGGGATCTTATCTCCACCGTGGGGCGTACACAATT
TGAAAAGCTACCCATTGTGATCGGCTATCAATCTCTGAAGCTGCAGGATT
ATAATGTCTGTTGGAAGATTTTACTAATCGGTGGGGCACTAGCCTTTTGT
GTATTCATCGTGGAAGTTGTCGTGGGCTTGATTAATCGTCGAATATGAAA
GCTTTCTAGACCAT
BS23463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir47a-RA | 1782 | CG12900-PA | 1..1782 | 17..1798 | 8895 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir47a-RA | 2982 | CG12900-RA | 372..2156 | 17..1801 | 8910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10377954..10379738 | 1801..17 | 8910 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-28 12:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 6867..6923 | 687..745 | 128 | 71.2 | Plus |
BS23463.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:47 Download gff for
BS23463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir47a-RA | 372..2152 | 17..1797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:45 Download gff for
BS23463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir47a-RA | 372..2152 | 17..1797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:27 Download gff for
BS23463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir47a-RA | 372..2152 | 17..1797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:27 Download gff for
BS23463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10377958..10379738 | 17..1797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:45 Download gff for
BS23463.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6265463..6267243 | 17..1797 | 99 | | Minus |
BS23463.pep Sequence
Translation from 16 to 1797
> BS23463.pep
MRQIKLLVWLLVVGVVSSTEQLQFLKNFLEAVHKERSISTILLIQRKVHK
NDFLHGLYPIFWPIICLDETKRVELVNNFNKDFLALVYMESEADTLLLSA
LAADLNHIRDARIMIWLQMSPSENFLDRIVFQASKQKFLNLVVIENTLKT
RRFYPFPQPKVQVIDKPFEEKEIYPALWRNFMGKNAIAVPDLVPPRSFNS
FDPKTGHRRESGSIYNVFKAFTQRYNITMLLKWPLIRNTTQEEIIGKSVR
GEIDLPITGQLISFRHPNGSRSQPLLGMTALSIAVPCGPELPMFDRFFLF
YGLATPITITGYYVLLNTIEIILGTLSDRIKRHPRRKKILNLVLNLRVFS
CILSLPTPQGNRLRSVKGQLTMVMSITGLILSCIVAAQTSTILTMKPQYR
HIKNFQELSDSNITVVCNHLNYLTIKQQMDPKFMAKFMQNIWIVNSIEQM
KMIFDLNTSYAYQTFSYKKDPFTLLQMHTTRKAFCRTPGLDLVSGLAYTA
VLEKNSIYALALQDYTLKAFSAGLVYYWAEESIRDLISTVGRTQFEKLPI
VIGYQSLKLQDYNVCWKILLIGGALAFCVFIVEVVVGLINRRI*
BS23463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir47a-PA | 593 | CG12900-PA | 1..593 | 1..593 | 3050 | 100 | Plus |
| Ir94c-PB | 604 | CG31423-PB | 21..588 | 17..591 | 436 | 24.7 | Plus |
| Ir94a-PA | 595 | CG31164-PA | 14..588 | 7..592 | 420 | 24.5 | Plus |
| Ir67a-PB | 584 | CG12525-PB | 4..569 | 11..586 | 382 | 24.1 | Plus |
| Ir94b-PB | 592 | CG31424-PB | 8..573 | 6..584 | 356 | 22.9 | Plus |
