BS23473.complete Sequence
1061 bp assembled on 2011-02-08
GenBank Submission: KX801137
> BS23473.complete
GAAGTTATCAGTCGACATGAGGGAACCACTGCCCGTGGCGGTGGTGACGT
TGCTCCTGTTCCTGTGGCTCGGTTCGGCGATGCCACCCACATCTGGTTCG
GCGGTGCTCATCTCCGACATGACCATGAGCGTCATGGTGGAGCTATCCTC
GCGACATCCCTTCTGCAAGATGCACACAGATCGTGGTGATATCCAGCGCA
TGTTGCTGCAATCGGATCCGCGACGCATACGCCAGGTGCCGCGGGAGTCG
GTGATGGAGCTCGAGGAGGTGTGCCGCCGTCAGGGATCCTATGGCCACGA
GTTTCGCGGCGGACTGGGCTTCATCTATCCGGGCACAAAGTGGTGCGGAC
CGGGCACAGCGGCCACCAGCTACGACGATCTCGGTGCGCACGCTCGCGAG
GATCGCTGCTGTCGCGAGCACGACATGTGTCCCGATGTGCTAAATGTGGG
CGAATGCAGGCGAGGATTGTGCAATCGCGGCACATTCACGAGAAGCCACT
GCGATTGCGATGCCCGGTTCAGGCGATGCTTGCAGGCGGCAAACACGGAG
ACGGCCAATACGCTGGGCGCCATCTTCTACAATGTGGTGCAGGTGACGTG
CTTCCAGGAGCGGAGTCCCTGCTCGGCACACCAGAGGTTCGAGGACTTCT
ACTACCGCACCGATCACTGTCCGGCGGAATTCCGGCAGGCGGATCTCTAT
GTGCCGCCGCACGGTGACAATCTGATAGCCAAGATCCTGGCCCATCCGCA
GGGCCGGGCCCTGGCCGCTCCGTCCTGGACGATTCCCGCCAAGTCGACGG
CGCGCCGTTGGGGCGTTAAATTGGCCAGCGTTGGCTTGGCGGCGGTGAAT
ATCCTGCGGGAGGTGGTGCAGCGACCCCGACTCCTGTGGGATAGCCTGCA
GGCGCCGGTCTCCAGGGAGCTACCACCGCCGCAAAGATATCACGATCCGG
GCTATCACTACGAGCGACCCGGACCCGGCTCGTCCTACGGATATGGCCAA
TACAGTGGTCGCGGTTACGGGGGCTTCGACTCCCCTTGGAGCTAAAAGCT
TTCTAGACCAT
BS23473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3009-RB | 1029 | CG3009-PB | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| CG3009-RA | 1029 | CG3009-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| CG3009-RD | 720 | CG3009-PD | 1..620 | 17..636 | 3100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3009-RB | 2056 | CG3009-RB | 278..1307 | 16..1045 | 5150 | 100 | Plus |
| CG3009-RA | 2475 | CG3009-RA | 278..1307 | 16..1045 | 5150 | 100 | Plus |
| CG3009-RD | 1277 | CG3009-RD | 278..898 | 16..636 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4659326..4660188 | 1045..183 | 4315 | 100 | Minus |
| X | 23542271 | X | 4660258..4660425 | 183..16 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:28:45 has no hits.
BS23473.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-09 09:50:00 Download gff for
BS23473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3009-RB | 276..1302 | 17..1043 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:29 Download gff for
BS23473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3009-RA | 279..1305 | 17..1043 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:19 Download gff for
BS23473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3009-RA | 279..1305 | 17..1043 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:19 Download gff for
BS23473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4659328..4660187 | 184..1043 | 100 | <- | Minus |
| X | 4660258..4660424 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:29 Download gff for
BS23473.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4553361..4554220 | 184..1043 | 100 | <- | Minus |
| arm_X | 4554291..4554457 | 17..183 | 100 | | Minus |
BS23473.pep Sequence
Translation from 16 to 1044
> BS23473.pep
MREPLPVAVVTLLLFLWLGSAMPPTSGSAVLISDMTMSVMVELSSRHPFC
KMHTDRGDIQRMLLQSDPRRIRQVPRESVMELEEVCRRQGSYGHEFRGGL
GFIYPGTKWCGPGTAATSYDDLGAHAREDRCCREHDMCPDVLNVGECRRG
LCNRGTFTRSHCDCDARFRRCLQAANTETANTLGAIFYNVVQVTCFQERS
PCSAHQRFEDFYYRTDHCPAEFRQADLYVPPHGDNLIAKILAHPQGRALA
APSWTIPAKSTARRWGVKLASVGLAAVNILREVVQRPRLLWDSLQAPVSR
ELPPPQRYHDPGYHYERPGPGSSYGYGQYSGRGYGGFDSPWS*
BS23473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:02:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3009-PB | 342 | CG3009-PB | 1..342 | 1..342 | 1876 | 100 | Plus |
| CG3009-PA | 342 | CG3009-PA | 1..342 | 1..342 | 1876 | 100 | Plus |
| CG3009-PD | 239 | CG3009-PD | 1..232 | 1..230 | 1128 | 90.6 | Plus |
| CG42237-PB | 309 | CG42237-PB | 197..297 | 100..200 | 259 | 44.6 | Plus |
| CG42237-PA | 363 | CG4346-PA | 251..351 | 100..200 | 259 | 44.6 | Plus |
