Clone BS23485 Report

Search the DGRC for BS23485

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:234
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG33506-RA
Protein status:BS23485.pep: full length peptide match
Sequenced Size:995

Clone Sequence Records

BS23485.complete Sequence

995 bp assembled on 2011-01-25

GenBank Submission: KX804315

> BS23485.complete
GAAGTTATCAGTCGACATGTTGCCGAAATTAAAAACCGGTGGAGGGTTCT
TCTCCTATTTTAAGACTGAAAAGGGCCGAAAACTCGTATTCTACGCGGCG
GGAGCCACCACAGTGGGCCTCTTTCTTGGAAACTTCCTGCCGCACACATT
CGGCCTGAAATATTACCGCGATTTCGTGCAATGCTACCAACACGGCGTGG
GGCGTCCAGTGCCGGAGGCAGTGCAGCAGCGCCTGGAAAAGGCATTGGAT
CAGCTGGGCGTGACGCCCTTTGAGCGAAAGTTTGTGAAGCCCTTCACCGT
CTTTGGATTCGATGTTTTCCAGGCGGGCACCACTAAGTTTCGATTTGGAG
GCGCTTTGGGCATACCGGTGAACTATGGATACGACAGTCTGGAGGAGATT
AAGCGGGCAGACATTCGGTTTAGAGACAAACAGATCAACTGGAGTTCTCC
CAGCGGAAAACTGCTAGAGGAAGCCATCGTTTTGAATGAGGATGAACAGA
TTTTCGGTCTTAGCAAGGCTGTTCTGCAGATGCAAACCCATCGGGTACTG
CTCAACTCCATCTTTCCCAGCGTCAGCTTTCTTATGGTTTACACCATGGG
TCACTACCTCAACCTGCGGCTAGATCTCTTCGCCCGCCATGGAAGCGTGC
GGTTTGTGCTCTACAGCATTCTGGGTCTGTTTGGCTTAGGGCTCTGGTCC
TTCATGAAAGACTACAATCAGGTCTCTACGGACGCAGAGATTGACCAGCG
ACTGGCCACGATGGGTCCCCAACTTGTGGCAGCTGGAGCTAGCTTTTACG
ACAAACATCTAAAGAAGAACATCGCGCTGAGGGAGCTGATTGGAAATGAC
GTTTACACTGCACTGGGCAACGAAAACTATATGATTCGGCAAAAGTCCAT
GCCGCTAACAGCACGAAAATCTTTCTTCCTGGAGAAGCTGGAGGAACTCA
AAAAGGCGCAACAGCCTGAAACAGAGTAAAAGCTTTCTAGACCAT

BS23485.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33506-RA 963 CG33506-PA 1..963 17..979 4815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33506-RA 1073 CG33506-RA 45..1008 17..980 4820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14857905..14858364 649..190 2300 100 Minus
2R 25286936 2R 14857512..14857845 980..647 1670 100 Minus
2R 25286936 2R 14858424..14858596 189..17 865 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:34:24 has no hits.

BS23485.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-25 17:16:11 Download gff for BS23485.complete
Subject Subject Range Query Range Percent Splice Strand
CG33506-RA 43..998 22..977 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:16 Download gff for BS23485.complete
Subject Subject Range Query Range Percent Splice Strand
CG33506-RA 50..1005 22..977 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:38 Download gff for BS23485.complete
Subject Subject Range Query Range Percent Splice Strand
CG33506-RA 50..1005 22..977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:38 Download gff for BS23485.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14857515..14857845 647..977 100 <- Minus
2R 14857908..14858364 190..646 100 <- Minus
2R 14858424..14858591 22..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:16 Download gff for BS23485.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10745020..10745350 647..977 100 <- Minus
arm_2R 10745413..10745869 190..646 100 <- Minus
arm_2R 10745929..10746096 22..189 100   Minus

BS23485.pep Sequence

Translation from 16 to 978

> BS23485.pep
MLPKLKTGGGFFSYFKTEKGRKLVFYAAGATTVGLFLGNFLPHTFGLKYY
RDFVQCYQHGVGRPVPEAVQQRLEKALDQLGVTPFERKFVKPFTVFGFDV
FQAGTTKFRFGGALGIPVNYGYDSLEEIKRADIRFRDKQINWSSPSGKLL
EEAIVLNEDEQIFGLSKAVLQMQTHRVLLNSIFPSVSFLMVYTMGHYLNL
RLDLFARHGSVRFVLYSILGLFGLGLWSFMKDYNQVSTDAEIDQRLATMG
PQLVAAGASFYDKHLKKNIALRELIGNDVYTALGNENYMIRQKSMPLTAR
KSFFLEKLEELKKAQQPETE*

BS23485.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG33506-PA 320 CG33506-PA 1..320 1..320 1657 100 Plus