BS23504.complete Sequence
1760 bp assembled on 2011-02-18
GenBank Submission: KX800186
> BS23504.complete
GAAGTTATCAGTCGACATGTTTAAAAACAGAAAAATAATGAGTCGAATGC
TAATTAAACCTGCTGCCGCCACAGTTTCGGCCGCTTTGCAGCAGCACCAG
CGCCAGCAGCAACAGTACGTTATTCGCCGCTGGAAATCGTTCCTGCACAA
CAACAGCAACAATGCCAATCGACGTGCGGCGAAATCAACGGCAACAGCAA
CGGTGACGGCGGCAGCGACGTCGCAGCGCCATGGAACAAGCGGCGATTTC
ATTCAACCGTTAGACGTCCGCCGTTCCTTTTCAACCAGCCACAAAATGCC
GTCGTCGTCGAAAGCGCTCACACTGGATAACATAAATCCCAACTTTATTG
CCATGGAATATGCCGTTCGCGGTCCTCTGGTGATTCGTGCTGGGGAAATC
GAGAAGGAACTGGAAAAGGGTGTCAAGAAGCCATTCGACCAGGTGATCCG
TGCCAACATCGGTGATTGCCATGCGATGGGCCAGCAGCCCTTGACCTTCC
TGCGACAGCTGTTGGCGCTGACCTTCGAGACACGTCTGCTGGATTCACCC
GATTATCCCGAGGACGTCAAGAAGCGCGCCTGTGCCATTTTGAACGGCTG
CCAGGGTCAATCGGTGGGCTCGTACACCGACTCCGCCGGTCTGGAGGTGG
TGCGTCGCCAGGTTGCTCAGTACATCGAGAAAAGGGATGGCGGCATCGCC
TCCAATTGGCAGGACATCTATCTAACCGGCGGTGCCTCTCCCGGCATCAA
GAGCATTCTCTCCATGATCAACGCCGAGGTGGGATGCAAGGCGCCTGGTG
TCATGGTGCCCATTCCGCAGTACCCACTGTACTCGGCCACCATCTCTGAA
TATGGCATGACCAAGGTGGATTACTATCTGGAGGAGGAGACCGGCTGGAG
CCTGGACAGGAAGGAGCTGCAACGGTCCTACGATGAGGCCAAGAAGGTCT
GCAATCCGCGTGCCCTGGTCGTGATCAATCCGGGCAATCCCACCGGACAG
GTACTGACCCGCGAGAACATCGAGGAGATCATTAAGTTCGCACACGATAA
CAAGGTGCTGGTGCTGGCCGATGAGGTGTACCAGGACAATGTCTACGACA
AGAACTCCAAGTTCTGGTCGTTCAAGAAGGTGGCCTACGAAATGGGCGAC
CCCTATCGTAATCTGGAAATGGTCAGTTTCCTGTCCACCTCGAAGGGCTA
TCTGGGCGAGTGCGGCATTCGCGGCGGTTACATGGAGGTTCTCAATCTTG
ATCCCAAGGTCAAGGCCATGCTGACCAAGTCGATAACGGCGGCGCTTTGC
AGCACCACCGCTGGCCAGGTGGCCGTGAGTGCCCTGGTCAATCCACCGCA
GCCCGGAGAGCCATCATACGATCTGTACAAGAAGGAGCGCGATGGCATTC
TGGCCGCTCTAAAAGAACGGGCCGAGCTCGTCCACAAGGCACTGAACAGC
TTCGAAGGCTACAAGGTTAACCCCGTACAGGGCGCCATGTACGTCTTTCC
ACAGATCGAGATCCCGCCCAAGGCGATCGAGGCGGCCAAGGCCAAGGGCA
TGGCCCCCGATGTTTTCTACGCATTTGAGCTGCTCGAGACGAGCGGCATT
TGCATTGTTCCTGGCAGTGGATTTGGTCAGAAGCCCGGTACGTGGCATTT
CCGAAGCACGATCCTCCCGCAAACGGACAAGCTGAAGCTGATGATGGAGA
AGTTCCGCGTGTTCCACGCCGAGTTCATGAAAAAGTACAAGTAGAAGCTT
TCTAGACCAT
BS23504.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1640-RB | 1728 | CG1640-PB | 1..1728 | 17..1744 | 8505 | 99.5 | Plus |
| CG1640-RG | 1707 | CG1640-PG | 1..1707 | 38..1744 | 8400 | 99.5 | Plus |
| CG1640-RF | 1707 | CG1640-PF | 1..1707 | 38..1744 | 8400 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1640-RB | 2488 | CG1640-RB | 182..1910 | 17..1745 | 8510 | 99.5 | Plus |
| CG1640-RG | 2329 | CG1640-RG | 39..1751 | 33..1745 | 8430 | 99.5 | Plus |
| CG1640-RF | 2823 | CG1640-RF | 533..2245 | 33..1745 | 8430 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13378543..13379371 | 768..1596 | 4070 | 99.4 | Plus |
| X | 23542271 | X | 13378010..13378275 | 506..771 | 1330 | 100 | Plus |
| X | 23542271 | X | 13373863..13374103 | 33..273 | 1175 | 99.2 | Plus |
| X | 23542271 | X | 13374240..13374386 | 273..419 | 735 | 100 | Plus |
| X | 23542271 | X | 13379432..13379582 | 1595..1745 | 710 | 98 | Plus |
| X | 23542271 | X | 13377856..13377947 | 417..508 | 460 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 11:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2445 | 89..219 | 154 | 62.3 | Plus |
BS23504.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:15 Download gff for
BS23504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1640-RB | 188..1909 | 23..1744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:26 Download gff for
BS23504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1640-RB | 188..1909 | 23..1744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:28 Download gff for
BS23504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1640-RB | 188..1909 | 23..1744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:28 Download gff for
BS23504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13373860..13374103 | 28..273 | 98 | -> | Plus |
| X | 13374241..13374385 | 274..418 | 100 | -> | Plus |
| X | 13377858..13377947 | 419..508 | 100 | -> | Plus |
| X | 13378013..13378275 | 509..771 | 100 | -> | Plus |
| X | 13378547..13379370 | 772..1595 | 99 | -> | Plus |
| X | 13379433..13379581 | 1596..1744 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:26 Download gff for
BS23504.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13267893..13268136 | 28..273 | 98 | -> | Plus |
| arm_X | 13268274..13268418 | 274..418 | 100 | -> | Plus |
| arm_X | 13271891..13271980 | 419..508 | 100 | -> | Plus |
| arm_X | 13272046..13272308 | 509..771 | 100 | -> | Plus |
| arm_X | 13272580..13273403 | 772..1595 | 99 | -> | Plus |
| arm_X | 13273466..13273614 | 1596..1744 | 97 | | Plus |
BS23504.pep Sequence
Translation from 16 to 1743
> BS23504.pep
MFKNRKIMSRMLIKPAAATVSAALQQHQRQQQQYVIRRWKSFLHNNSNNA
NRRAAKSTATATVTAAATSQRHGTSGDFIQPLDVRRSFSTSHKMPSSSKA
LTLDNINPNFIAMEYAVRGPLVIRAGEIEKELEKGVKKPFDQVIRANIGD
CHAMGQQPLTFLRQLLALTFETRLLDSPDYPEDVKKRACAILNGCQGQSV
GSYTDSAGLEVVRRQVAQYIEKRDGGIASNWQDIYLTGGASPGIKSILSM
INAEVGCKAPGVMVPIPQYPLYSATISEYGMTKVDYYLEEETGWSLDRKE
LQRSYDEAKKVCNPRALVVINPGNPTGQVLTRENIEEIIKFAHDNKVLVL
ADEVYQDNVYDKNSKFWSFKKVAYEMGDPYRNLEMVSFLSTSKGYLGECG
IRGGYMEVLNLDPKVKAMLTKSITAALCSTTAGQVAVSALVNPPQPGEPS
YDLYKKERDGILAALKERAELVHKALNSFEGYKVNPVQGAMYVFPQIEIP
PKAIEAAKAKGMAPDVFYAFELLETSGICIVPGSGFGQKPGTWHFRSTIL
PQTDKLKLMMEKFRVFHAEFMKKYK*
BS23504.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1640-PB | 575 | CG1640-PB | 1..575 | 1..575 | 2977 | 100 | Plus |
| CG1640-PG | 568 | CG1640-PG | 1..568 | 8..575 | 2941 | 100 | Plus |
| CG1640-PF | 568 | CG1640-PF | 1..568 | 8..575 | 2941 | 100 | Plus |
| CG1640-PA | 568 | CG1640-PA | 1..568 | 8..575 | 2941 | 100 | Plus |
| CG1640-PE | 568 | CG1640-PE | 1..568 | 8..575 | 2941 | 100 | Plus |
