BS23516.complete Sequence
1316 bp assembled on 2011-06-14
GenBank Submission: KX802502
> BS23516.complete
GAAGTTATCAGTCGACATGTCTAGTAGCAGTCGCCGCGTCATGTGGAAGC
TCAACGAGGAGGAGGAGACATTCGACTCCTTGGTCAATTATCGGCGGCTT
CCTTCGCGCAGCCTAAACCGAAGTCAGGTGACCGATGTGCCCACCAAGGG
ACACACTACCTCCGAAAATTGCCAGCTGCCAGCGCAAGAGTTGGAAACAA
AGAGCGCCACCAACGAACAAGGTGCATTGGGCATAATGTCGGTTAGCCTA
CCGCAAACAACCAGGAATTCCCATCAATCGTCGGCCACGTCACTGCCGGA
GGCCAAGGGATGCACTGCCACCGAAAACTGCCAGTTGCTAGCGCAAGAGG
CGGAAACAAAGAACGCCAGCAACGAACAAGGTGGATTGGGCAAAATGTCG
GTTAGCCTGCCGCAACAAAACTGGAACGCCAATCAATCGTCGGCCACGTC
ACTGCCGGAGGCCAAGGAGATCAGCTCCAAAGAGCAGGCGATCATCTACT
GGCGGCGTCTTTTCGATGGTATCCACAAGCGCCAGCGTGGCGAAAGAAAA
GTTGCAGCAATGCAGCCCGAAAATACCACAGATGTCGTGCTGACGTCCAA
GCCAAACCTGGCATTGCGCTACAAGCCCTCCCATGAGTCGCTTAAAAACA
AGCGGATCAAGGACCTGGCTCCTGAACGATGCCCGAGCACGTCCCGGGGA
TCAACGTCCTGCAAACTGGTATCGGACCTCAAGATGGAGACGTTCAGCCT
GCCGCCGCAGCAGACGTGTGTGGTGCGCGAGGTGGAGCCTCGGTTTGGCC
AGCGCCGACGCATGTTGTTGGCCAACGACACGGATTCGTGCTACTCCGGC
GAGCTGGAGGTCCCCAAAAACAGTCCCGTCCAGGAGCCAGGACCCTATCC
GCGCAGCGAACTGATCAGTGTCCATGTCTCGGCGCCCACCAGCTCCTCTT
TTACGGGAGCAACACGGCGGAGTCTGTCTCCAACTAGGCAGCGCACTGCG
ACGAGCAAGGTGGCCGCCGGGACGAAGGGCGGACCATCACCAGCAGTTGG
GGGCAACAAGTGCTCGAGCGTCAGCAGCGGGAGTGCAGGTACCAGCCAGC
TGCCTAATTTCCGCCAGCGGCAGCAAGAGCTCCATCGCTATCGCGTTATG
ATCGAGCAACGGCGCCTCGATCTACTCGAGCTCAAGATAGCCCGCGAACG
CGAGGAGGCGCTGCACAGCGAGGTTCTGTTTCACAAGGAACTGCAGATCA
AGGAGAACATGATCAAGGTGTACGAGGACAACGACTGCTCCAACGCCTAG
AAGCTTTCTAGACCAT
BS23516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8136-RD | 1284 | CG8136-PD | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| CG8136-RC | 1284 | CG8136-PC | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| CG8136-RB | 1326 | CG8136-PB | 43..1326 | 17..1300 | 6420 | 100 | Plus |
| CG8136-RD | 1284 | CG8136-PD | 128..292 | 303..467 | 510 | 87.3 | Plus |
| CG8136-RD | 1284 | CG8136-PD | 287..451 | 144..308 | 510 | 87.3 | Plus |
| CG8136-RC | 1284 | CG8136-PC | 128..292 | 303..467 | 510 | 87.3 | Plus |
| CG8136-RC | 1284 | CG8136-PC | 287..451 | 144..308 | 510 | 87.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8136-RD | 1612 | CG8136-RD | 204..1487 | 17..1300 | 6420 | 100 | Plus |
| CG8136-RC | 1615 | CG8136-RC | 207..1490 | 17..1300 | 6420 | 100 | Plus |
| CG8136-RB | 1620 | CG8136-RB | 212..1495 | 17..1300 | 6420 | 100 | Plus |
| CG8136-RD | 1612 | CG8136-RD | 331..495 | 303..467 | 510 | 87.3 | Plus |
| CG8136-RD | 1612 | CG8136-RD | 490..654 | 144..308 | 510 | 87.3 | Plus |
| CG8136-RC | 1615 | CG8136-RC | 334..498 | 303..467 | 510 | 87.3 | Plus |
| CG8136-RC | 1615 | CG8136-RC | 493..657 | 144..308 | 510 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8721643..8722926 | 17..1300 | 6420 | 100 | Plus |
| 3R | 32079331 | 3R | 8721770..8721934 | 303..467 | 510 | 87.3 | Plus |
| 3R | 32079331 | 3R | 8721929..8722093 | 144..308 | 510 | 87.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:37:46 has no hits.
BS23516.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-14 17:47:20 Download gff for
BS23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8136-RC | 207..1490 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:01 Download gff for
BS23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8136-RB | 212..1495 | 17..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:57 Download gff for
BS23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8136-RB | 212..1495 | 17..1300 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:57 Download gff for
BS23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8721643..8722926 | 17..1300 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:01 Download gff for
BS23516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4547365..4548648 | 17..1300 | 100 | | Plus |
BS23516.pep Sequence
Translation from 16 to 1299
> BS23516.pep
MSSSSRRVMWKLNEEEETFDSLVNYRRLPSRSLNRSQVTDVPTKGHTTSE
NCQLPAQELETKSATNEQGALGIMSVSLPQTTRNSHQSSATSLPEAKGCT
ATENCQLLAQEAETKNASNEQGGLGKMSVSLPQQNWNANQSSATSLPEAK
EISSKEQAIIYWRRLFDGIHKRQRGERKVAAMQPENTTDVVLTSKPNLAL
RYKPSHESLKNKRIKDLAPERCPSTSRGSTSCKLVSDLKMETFSLPPQQT
CVVREVEPRFGQRRRMLLANDTDSCYSGELEVPKNSPVQEPGPYPRSELI
SVHVSAPTSSSFTGATRRSLSPTRQRTATSKVAAGTKGGPSPAVGGNKCS
SVSSGSAGTSQLPNFRQRQQELHRYRVMIEQRRLDLLELKIAREREEALH
SEVLFHKELQIKENMIKVYEDNDCSNA*
BS23516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8136-PD | 427 | CG8136-PD | 1..427 | 1..427 | 2185 | 100 | Plus |
| CG8136-PC | 427 | CG8136-PC | 1..427 | 1..427 | 2185 | 100 | Plus |
| CG8136-PB | 441 | CG8136-PB | 15..441 | 1..427 | 2185 | 100 | Plus |
| CG8136-PA | 440 | CG8136-PA | 14..440 | 1..427 | 2185 | 100 | Plus |
