BS23517.complete Sequence
1859 bp assembled on 2011-02-18
GenBank Submission: KX802958
> BS23517.complete
GAAGTTATCAGTCGACATGGAGGAAGAACCCTTAGTTTCCCCTTCGGTTC
CAATTCGAAAGCCATGTGGTACGTTTAAGCCTCCGGCCATCTACCAGAAG
CTGATGATTGACAATCTGACTGTCATTCGACCGCCCATCCTGAAGATCTT
CTACTGGGAGAGCTTTGAAATAACGGGCTTGAATCGGAAGCTGCGTTCGA
ACCGCATAGAGCATGAGCATACATTCAAGATACCTATTCGCCAGATCCAC
AGTCATCCCCTGAAAATGGTCTTCTGGATCCGTAATCTATCGGCCGCGAA
CGCCAAGTTGACTCTAAAGCGTATCCAAAACTGTCAATGCCAGCCGCAGC
AGACCCAAGTCGGATTCAATCAGTTCCGCCAGCTCTTCCACTGCCCACAT
CGCAGACTGCTCCACATCAGCCAGGAGATTTTGTCTATCAATCCTGATGA
GGTGGTGGCCCTCACCGTAACGGCCTATTTCTTCTTGTACGGCGAACACC
TGCTCACCTACGAAGTTCACACTGAAGACAATCGCAAGTTTCTGTGGCAT
TTTCATCTGGAGATCTCGTCCTTTGACCCCGAAAAGTGTCTACTCACTAA
AGAGCTGCTGCCGGTAAACATAAAAAGCTTTTACCATATAACGCAGCCGT
TGTGGGTCCAAAATATCACGATGTCACACTTGTCATTCTCGTTTGCTTCA
AGGGATCGTGGCCTCAAGCTGCTCAATATGAATCTCACCGTGCCTCGACA
GAGTGTGTGGCCCCTCCTGGTGGACTATCGACCCTTGGACTACGAAAATG
AGGCGGAAATTGTCTTAACATATGAAAATACCAAGGCTCGCTACAAAATT
AAAGCACGAGGCGTGCTGACTGACGAGAAGGAGCAGACGGACATGCCCTT
GAAGGATCGGGAATGCGTCGATTTCCTGCACGTCATCTACCCTAATAGAG
TAAACTTTGAAATCTGCCTGCGTGAAGATCGGACGCAGCTCGTCAATGTC
CATAACTACGGACAGCAGTGCATGGAGTTTCGGTGGCAGAGCTACATAAT
CAACGATTTTTTTGCGGTTGTGTTCAATCCGCCTATTTTCCGCCTTAAAG
GCCATCACTCGAAGCTGTGCGAGATCAGAGTGACGGTGTTCGACCGACTG
GTCCACTTCCGCCGCATTCCCATCGTGCTGGAGGTGCACCGCATTCTCGA
TCGCGCCACCATCATAGCCAAGCAGGAGCTGGAGGAGGTGGAGTCCATCG
ACGATCCCAAATGGAAAGAGGACAGCTACGTGGAGCACGTCTATCTGCAC
CTGAACATCCGCACCAATATTAAGCCCGCTCTGGACTCTGAGGAGCTGGA
ACCGGGCGATAGGATCGACCCCACGGCTGGACCCGAACCCTGTAGCCAAG
TTGGTCCTGGGGAAGCCAGGAGAGGCAACGGCTCGGGTGACGGTCCATCG
ACACCTGCACCGAACACCGAGGAGCAGCGCAAAGAGGCCGAGCGCAAGGA
GCTGATCTCCCGACTGGTGGCCAAGAACAAACTCAATCCCAACGAGATCA
TCGAGCTCAGCATGGCCATTGATCAGCGAATAACCATTTTCGAGAAGCTA
TTCTGGAAGTACCTCAGCAAGTCCAAGTTCATGCGAATCAATGGTGAGCG
CAAGCGTCAGAAGGTGGTCAAGACCTACGAGCAAGTGGTGTCCCCGGATA
AGACGACTCCCCTGGAGGCAGCATCGGAAATTGATCGAAATCACATCATG
GATCTGCTGTCCCGACTGATGCAGGAGGCCATCAACGACTTGGCCAAGAA
CTGGGTCTTTATTCCGTCGCAGTACTACGAACGCAACCATTAGAAGCTTT
CTAGACCAT
BS23517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17005-RE | 1827 | CG17005-PE | 1..1827 | 17..1843 | 8880 | 99.1 | Plus |
| CG17005-RB | 1827 | CG17005-PB | 1..1827 | 17..1843 | 8880 | 99.1 | Plus |
| CG17005-RD | 180 | CG17005-PD | 1..161 | 17..177 | 805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17005-RE | 2182 | CG17005-RE | 57..1883 | 17..1843 | 8880 | 99.1 | Plus |
| CG17005-RB | 1917 | CG17005-RB | 57..1883 | 17..1843 | 8880 | 99.1 | Plus |
| CG17005-RC | 1969 | CG17005-RC | 269..1935 | 177..1843 | 8080 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9329077..9329777 | 1040..1740 | 3400 | 99 | Plus |
| 2L | 23513712 | 2L | 9328012..9328354 | 177..519 | 1670 | 99.1 | Plus |
| 2L | 23513712 | 2L | 9328413..9328696 | 520..803 | 1390 | 99.3 | Plus |
| 2L | 23513712 | 2L | 9328752..9328992 | 801..1041 | 1145 | 98.3 | Plus |
| 2L | 23513712 | 2L | 9327800..9327960 | 17..177 | 805 | 100 | Plus |
| 2L | 23513712 | 2L | 9329931..9330033 | 1741..1843 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:44:39 has no hits.
BS23517.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:17 Download gff for
BS23517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17005-RB | 57..1883 | 17..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:06 Download gff for
BS23517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17005-RB | 57..1883 | 17..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:33 Download gff for
BS23517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17005-RB | 57..1883 | 17..1843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:33 Download gff for
BS23517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9328413..9328695 | 520..802 | 99 | -> | Plus |
| 2L | 9328754..9328992 | 803..1041 | 98 | -> | Plus |
| 2L | 9327800..9327960 | 17..177 | 100 | -> | Plus |
| 2L | 9328013..9328354 | 178..519 | 99 | -> | Plus |
| 2L | 9329079..9329777 | 1042..1740 | 98 | -> | Plus |
| 2L | 9329931..9330033 | 1741..1843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:06 Download gff for
BS23517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9328754..9328992 | 803..1041 | 98 | -> | Plus |
| arm_2L | 9327800..9327960 | 17..177 | 100 | -> | Plus |
| arm_2L | 9328013..9328354 | 178..519 | 99 | -> | Plus |
| arm_2L | 9328413..9328695 | 520..802 | 99 | -> | Plus |
| arm_2L | 9329079..9329777 | 1042..1740 | 98 | -> | Plus |
| arm_2L | 9329931..9330033 | 1741..1843 | 99 | | Plus |
BS23517.pep Sequence
Translation from 16 to 1842
> BS23517.pep
MEEEPLVSPSVPIRKPCGTFKPPAIYQKLMIDNLTVIRPPILKIFYWESF
EITGLNRKLRSNRIEHEHTFKIPIRQIHSHPLKMVFWIRNLSAANAKLTL
KRIQNCQCQPQQTQVGFNQFRQLFHCPHRRLLHISQEILSINPDEVVALT
VTAYFFLYGEHLLTYEVHTEDNRKFLWHFHLEISSFDPEKCLLTKELLPV
NIKSFYHITQPLWVQNITMSHLSFSFASRDRGLKLLNMNLTVPRQSVWPL
LVDYRPLDYENEAEIVLTYENTKARYKIKARGVLTDEKEQTDMPLKDREC
VDFLHVIYPNRVNFEICLREDRTQLVNVHNYGQQCMEFRWQSYIINDFFA
VVFNPPIFRLKGHHSKLCEIRVTVFDRLVHFRRIPIVLEVHRILDRATII
AKQELEEVESIDDPKWKEDSYVEHVYLHLNIRTNIKPALDSEELEPGDRI
DPTAGPEPCSQVGPGEARRGNGSGDGPSTPAPNTEEQRKEAERKELISRL
VAKNKLNPNEIIELSMAIDQRITIFEKLFWKYLSKSKFMRINGERKRQKV
VKTYEQVVSPDKTTPLEAASEIDRNHIMDLLSRLMQEAINDLAKNWVFIP
SQYYERNH*
BS23517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17005-PE | 608 | CG17005-PE | 1..608 | 1..608 | 3221 | 100 | Plus |
| CG17005-PB | 608 | CG17005-PB | 1..608 | 1..608 | 3221 | 100 | Plus |
| CG17005-PC | 54 | CG17005-PC | 1..54 | 1..54 | 289 | 100 | Plus |
| CG17005-PD | 59 | CG17005-PD | 1..54 | 1..54 | 289 | 100 | Plus |
