BS23518.complete Sequence
1133 bp assembled on 2011-02-08
GenBank Submission: KX803928
> BS23518.complete
GAAGTTATCAGTCGACATGAACCGGCCGGAGCTGGACTACTACGCGGTGC
TGGATCAGCCCAGAGGCGCCACCAAGGAGCAGATTACTCTGGCCTACCGC
CGCCTGGCCATTCGTCTTTGCCCACATCGCGACAAGAAGGACGAGCAGGA
CTTTGTGCCGCTGGCCCAGGAGGGTCGTCTCACTCACCTCTCACCCATGG
GCGAGCCCAGGCAGTGGGCTTACGTCAACATGGCCTTCGATGTGCTGGGC
AACGATCTGTACCGGGCCATATACGATCGCTTTGGCGAGGCGGGTTTGTT
CGAGGGCGTCATGCTGCCGAACGGATACTTTCCGCCCTATCAGTACGACG
GCGACCACATGAAGGTCTACGAGCGGGTCTTCGGTAGCTACTCGCCGTAT
GCCAACGTGATCGATGCGATCTCCAATCCACCGAGCTTGTACGCTACGCG
CCAGCATGGCATTGGCGTGCGTTCCAAGGACGCCAGTACGGAGAGGATCA
TCGAGCTGTCGCTGGAGGAAGTACGCACTGGCTGCGTCAAGCTGATGAAC
GTGTGGCGCCAGGAGATCGTGGACGCCAAGGAGTCGCGGCTGGAGAAGCG
CAAGCACACCTTAAAGCTGAACATTGCCCCGGGAACCACGGCCGGAACTC
GCTTCTGCTTCAAGGAGGAGGGCGATCGCTATCCGGCCACCATTCCGGGT
GATATTATTTTCATTGCCGCCGACAAGCCGCATCCGGACTTTGAGAGGAG
AAACCAACACGACCTGGTCTACAGGCAGTCTATTGGCCTGTGCCAGGCCT
TCACCGGCTTCACGTTCTTCATTTGCACGCTGGACCGGCGCCAGTTGAAG
GTGGTCATTACGGACGTAGTGCAGCCGGGATACACCAAAGTGGTTCCCCT
CGAGGGACTCCCCAAGTGCCGCAATTTGGATGCAGTTACGGCCATCAAGG
AGGCCAACAAGAAGGTGGAGCAGTTCGGGGATCTCATTATAGAATTTGAT
TATATCTTTCCCAAGTATTTGACTCCACATATGAAGCATATCACTCGCGA
ATTCTTCCGCGAATTCCGCAAGCTCGAAATAGAATTGGAGGAGGAGGAGG
AACGTAACATGGTTTGAAAGCTTTCTAGACCAT
BS23518.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12020-RA | 1101 | CG12020-PA | 1..1101 | 17..1117 | 5430 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12020-RA | 1242 | CG12020-RA | 61..1161 | 17..1117 | 5430 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1797365..1798349 | 17..1001 | 4865 | 99.6 | Plus |
| 3L | 28110227 | 3L | 1798414..1798529 | 1002..1117 | 565 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:25:59 has no hits.
BS23518.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-09 09:49:55 Download gff for
BS23518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12020-RA | 61..1160 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:50 Download gff for
BS23518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12020-RA | 61..1160 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:52 Download gff for
BS23518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12020-RA | 61..1160 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:52 Download gff for
BS23518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1798414..1798528 | 1002..1116 | 99 | | Plus |
| 3L | 1797365..1798349 | 17..1001 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:50 Download gff for
BS23518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1798414..1798528 | 1002..1116 | 99 | | Plus |
| arm_3L | 1797365..1798349 | 17..1001 | 99 | -> | Plus |
BS23518.pep Sequence
Translation from 16 to 1116
> BS23518.pep
MNRPELDYYAVLDQPRGATKEQITLAYRRLAIRLCPHRDKKDEQDFVPLA
QEGRLTHLSPMGEPRQWAYVNMAFDVLGNDLYRAIYDRFGEAGLFEGVML
PNGYFPPYQYDGDHMKVYERVFGSYSPYANVIDAISNPPSLYATRQHGIG
VRSKDASTERIIELSLEEVRTGCVKLMNVWRQEIVDAKESRLEKRKHTLK
LNIAPGTTAGTRFCFKEEGDRYPATIPGDIIFIAADKPHPDFERRNQHDL
VYRQSIGLCQAFTGFTFFICTLDRRQLKVVITDVVQPGYTKVVPLEGLPK
CRNLDAVTAIKEANKKVEQFGDLIIEFDYIFPKYLTPHMKHITREFFREF
RKLEIELEEEEERNMV*
BS23518.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12020-PA | 366 | CG12020-PA | 1..366 | 1..366 | 1941 | 100 | Plus |
| CG5001-PC | 346 | CG5001-PC | 4..344 | 7..345 | 368 | 29.1 | Plus |
| CG5001-PD | 350 | CG5001-PD | 4..348 | 7..345 | 364 | 28.8 | Plus |
| CG5001-PA | 350 | CG5001-PA | 4..348 | 7..345 | 364 | 28.8 | Plus |
| CG5001-PB | 350 | CG5001-PB | 4..348 | 7..345 | 364 | 28.8 | Plus |
