BS23520.complete Sequence
1229 bp assembled on 2011-03-18
GenBank Submission: KX803597
> BS23520.complete
GAAGTTATCAGTCGACATGAATCTGCTGTGCTGCTGTTGTTGCAGTAACA
TGGCACCAAACCAACGCGTCACACGCAAATGGGAACTGTTTGCCGGACGC
AATAAATTCTACTGCGATGGATTGCTAATGTCCGCACCGCACACAGGCGT
CTTCTACTTGACGTGCATCCTGATTACCGGCACCAGTGCGCTCTTCTTTG
CCTTCGACTGTCCCTTTCTGGCGGACAGCATAAATCCGGCCATTCCGATT
GTGGGAGCGGTACTATACTTCTTCACGATGAGCTCCTTGCTGCGCACAAC
CTTCACGGATCCGGGCGTCATACCGCGAGCCTCCAACGATGAGGCCGCCT
ATATTGAAAAGCAAATAGAGGTGCCAAACTCGCTGAACAGTCCCACATAT
CGACCGCCGCCGAGGACCAAGGAGGTCCTGGTCAAAGGACAAACGGTCAA
GCTGAAATACTGTTTCACCTGCAAGATCTTCCGGCCGCCGAGGGCCTCGC
ACTGCAGCCTGTGCGACAACTGCGTGGACCGCTTCGATCACCACTGTCCC
TGGGTGGGAAACTGCGTGGGCAAGCGGAATTATCGGTTCTTTTATTTGTT
TCTAGTCTCATTGGCATTTTTAGCTGTATTTATATTCTCGTGCTCTGTGA
CGCATTTAGTTTTATTGATGAAGAAGGAGCACGAGGTCTTTAATGTAATC
AAGGCGGCGCCCTTCACTGTGATTGTTGTGTTCATTTGCTTCTTCTCGAT
ATGGTCGGTGATCGGCCTGGCCGGCTTCCATACCTATCTGACGACTAGCG
ATCAGACAACCAACGAGGATCTCAAGGGATCCTTCTCCTCCAAAGGCGGT
CCACGCACCCAAAATCCCTATTCACGGGGCAACATTTGCCTGAACTGCTG
TCACATCCTGTGCGGACCCATGACGCCCTCGCTGATCGATAGACGCGGCA
TCGCCACCGACGAGTTCATCCAGCAGATGCAGCACCAGTCGAGTCCGCGG
CACGCACTGAGCGATGTGCTGAGTGCCTCGCACATGGTCACCACCTCGCA
GCCAATGATGGGTGGTTTAGGTGGTGGTGGCATCGGTGGTGCCGGCGGCG
GGATCAGCATTGGTGGAGCGGAGCTAAAGCCCCGATTCTACGACGAGGTA
AGCGGCCAATCCAGCGGCCACATTGAGTCAATCCAAGAGCACCCTTTCAC
CACCGAAATCTAAAAGCTTTCTAGACCAT
BS23520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| app-RI | 1197 | CG42318-PI | 1..1197 | 17..1213 | 5940 | 99.7 | Plus |
| app-RH | 1197 | CG42318-PH | 1..1197 | 17..1213 | 5940 | 99.7 | Plus |
| app-RO | 1149 | CG42318-PO | 1..1135 | 17..1151 | 5630 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| app-RI | 2867 | CG42318-RI | 1592..2790 | 17..1215 | 5950 | 99.7 | Plus |
| app-RH | 2889 | CG42318-RH | 1614..2812 | 17..1215 | 5950 | 99.7 | Plus |
| app-RO | 4422 | CG42318-RO | 1592..2726 | 17..1151 | 5630 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12213025..12213299 | 1215..941 | 1360 | 99.6 | Minus |
| 3L | 28110227 | 3L | 12215615..12215805 | 556..366 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 12219978..12220168 | 207..17 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 12216419..12216579 | 368..208 | 805 | 100 | Minus |
| 3L | 28110227 | 3L | 12213719..12213873 | 820..666 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 12213354..12213475 | 942..821 | 580 | 98.4 | Minus |
| 3L | 28110227 | 3L | 12213940..12214052 | 665..553 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:35:43 has no hits.
BS23520.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 12:09:29 Download gff for
BS23520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RI | 1540..2734 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:13 Download gff for
BS23520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RH | 1614..2808 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:18 Download gff for
BS23520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| app-RH | 1614..2808 | 17..1211 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:18 Download gff for
BS23520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12213029..12213297 | 943..1211 | 99 | <- | Minus |
| 3L | 12213354..12213475 | 821..942 | 98 | <- | Minus |
| 3L | 12213719..12213873 | 666..820 | 100 | <- | Minus |
| 3L | 12213940..12214051 | 554..665 | 100 | <- | Minus |
| 3L | 12215618..12215802 | 369..553 | 100 | <- | Minus |
| 3L | 12216419..12216579 | 208..368 | 100 | <- | Minus |
| 3L | 12219978..12220168 | 17..207 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:13 Download gff for
BS23520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12206129..12206397 | 943..1211 | 99 | <- | Minus |
| arm_3L | 12206454..12206575 | 821..942 | 98 | <- | Minus |
| arm_3L | 12206819..12206973 | 666..820 | 100 | <- | Minus |
| arm_3L | 12207040..12207151 | 554..665 | 100 | <- | Minus |
| arm_3L | 12208718..12208902 | 369..553 | 100 | <- | Minus |
| arm_3L | 12209519..12209679 | 208..368 | 100 | <- | Minus |
| arm_3L | 12213078..12213268 | 17..207 | 100 | | Minus |
BS23520.pep Sequence
Translation from 16 to 1212
> BS23520.pep
MNLLCCCCCSNMAPNQRVTRKWELFAGRNKFYCDGLLMSAPHTGVFYLTC
ILITGTSALFFAFDCPFLADSINPAIPIVGAVLYFFTMSSLLRTTFTDPG
VIPRASNDEAAYIEKQIEVPNSLNSPTYRPPPRTKEVLVKGQTVKLKYCF
TCKIFRPPRASHCSLCDNCVDRFDHHCPWVGNCVGKRNYRFFYLFLVSLA
FLAVFIFSCSVTHLVLLMKKEHEVFNVIKAAPFTVIVVFICFFSIWSVIG
LAGFHTYLTTSDQTTNEDLKGSFSSKGGPRTQNPYSRGNICLNCCHILCG
PMTPSLIDRRGIATDEFIQQMQHQSSPRHALSDVLSASHMVTTSQPMMGG
LGGGGIGGAGGGISIGGAELKPRFYDEVSGQSSGHIESIQEHPFTTEI*
BS23520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| app-PI | 398 | CG42318-PI | 1..398 | 1..398 | 2153 | 100 | Plus |
| app-PH | 398 | CG42318-PH | 1..398 | 1..398 | 2153 | 100 | Plus |
| app-PR | 693 | CG42318-PR | 1..383 | 1..383 | 2050 | 99 | Plus |
| app-PM | 693 | CG42318-PM | 1..383 | 1..383 | 2050 | 99 | Plus |
| app-PO | 382 | CG42318-PO | 1..378 | 1..378 | 2049 | 100 | Plus |
