BS23523.complete Sequence
1601 bp assembled on 2011-02-18
GenBank Submission: KX801346
> BS23523.complete
GAAGTTATCAGTCGACATGTGCGGTCCTTATCCGCGGAGGCGTCGCTACT
ACCAGATTCGCGAATTCCAGATGGCCTCCTCGGCGGACGAGCTGGAAAGC
GAGGATCCGGACGATGAGCTGGAACTGGACGATTCCGAACCTCCAACCCG
CGCTGAAGACTTGCCCAAGCGACTGTACGACATTAACGAGGCGGATGCGG
ACAGCAAGGCCGTAAATCTAGAGCAGCTAACGATTAAAGAGGAGGATGCC
TGGTGGAACCAAGTGCCATTGAACAACCTGGACCTGAGCTCAAACACCTT
AACGCACATATCGCCAAAGATCGAGAATCTGCAATCACTTACCGTGCTTA
CGCTGCACGATAATGCTTTGGTGGAGTTACCACCGGAGATCGGCAAGCTG
GAAAAGCTAGTGCGCCTTAATGTGAGCCACAACAAACTCAGCCAGCTGCC
GCGTGCGATGTACAGTCTACCGGAGCTGCGGCACCTCAACATCTCGTACA
ACGAGTTCGTCGAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAG
TTTTTGGACGGTGGGCATAACAATATTCAATCCCTGCCCGGTGGCATTGG
GTTCCTGGTGCGTCTAACTGCGCTCTTGTTGCCCTATAATCACATCAAGG
AACTGCCGCCCGATCTTGTTAACATGCGCTCTTTGCAAAAGATTGATCTG
ATGCATAATGATCTGACCAGCTTGCCGGAGGATATGGGCCTTTTGAGAAA
GCTGGATTGCCTTTATCTGCAGCATAACGACATACTGGAACTGCCCGAGT
TCGAGGGAAACGAGGCCTTGAACGAGCTACATGCCAGCAATAATTTCATC
AAGATCATACCAAAAGCTATGTGTAGTAACTTGCCACACCTGAAGATACT
GGATTTGCGGGACAATAAGATCACGGAGCTGCCCGACGAGCTGTGCCTGC
TGCGCAATCTAAACCGTCTCGATGTGTCCAATAATACGATCAGCGTGCTG
CCAGTCACATTGTCCTCCTTGGCTCATCTGATTAGCCTGCAGGTGGAGGG
AAATCCCATAAAGACAATCAGACGCGACATCCTACAGTGTGGAACAACGA
GGATCTTAAAGACTCTGCACGATAGAGCTGTGGCGAAGGCCAAGGAGGAG
GGAGGTGGCGTCGACGACGCTTCCACGTCAGCGGGCATCAGTGTTACCCG
TTTGCGTGGTGGCCAAATGGACGATGGTGATATACCCGGAAACTTTCCGG
ATAGCTTTCACCACCAGCAACAGCAGAACGGATTCCAATGTCCTTGTTCA
TATCCATGTCAGCAGCAGCAAATGCAGCAGCAGTTTTGTGTGTATGAGCC
GCTCAGAAACTGTCAGGAATATGATCGCCAGACCCAAGGGCGCATATATG
AGCCCGAAAACTACCAACAGCAACATCAGAATGGCAGCTTGAGATCACTT
TTTGTGCAACAGCAGCAGCAGCGAATGGAGTATCCCTATCCAGGATACTT
TATGTACCAACAGCAGCAGCAACAGCAGTTCTCCTATGAGCAAGATCCAT
CCTCTCGCTCAGCTGTCCATCCACGTTGGGTGTAGAAGCTTTCTAGACCA
T
BS23523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-RI | 1569 | CG9611-PI | 1..1569 | 17..1585 | 7845 | 100 | Plus |
| f-cup-RC | 1569 | CG9611-PC | 1..1569 | 17..1585 | 7845 | 100 | Plus |
| f-cup-RD | 1425 | CG9611-PD | 2..1424 | 162..1584 | 7115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-RI | 3319 | CG9611-RI | 850..2419 | 16..1585 | 7850 | 100 | Plus |
| f-cup-RC | 3407 | CG9611-RC | 938..2507 | 16..1585 | 7850 | 100 | Plus |
| f-cup-RD | 2532 | CG9611-RD | 211..1633 | 162..1584 | 7115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13696827..13697229 | 1254..852 | 2015 | 100 | Minus |
| 3R | 32079331 | 3R | 13696438..13696771 | 1585..1252 | 1670 | 100 | Minus |
| 3R | 32079331 | 3R | 13697834..13698039 | 557..352 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 13698091..13698281 | 352..162 | 955 | 100 | Minus |
| 3R | 32079331 | 3R | 13697292..13697464 | 853..681 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 13698343..13698488 | 161..16 | 730 | 100 | Minus |
| 3R | 32079331 | 3R | 13697523..13697647 | 680..556 | 625 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 11:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6877 | 1413..1528 | 130 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2414 | 1457..1528 | 126 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6814 | 1456..1528 | 125 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 1413..1528 | 125 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2521 | 1310..1527 | 124 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2372 | 1446..1528 | 123 | 63.9 | Plus |
BS23523.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:17 Download gff for
BS23523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RC | 888..2456 | 17..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:52 Download gff for
BS23523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RC | 939..2507 | 17..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:54 Download gff for
BS23523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RC | 939..2507 | 17..1585 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:54 Download gff for
BS23523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13697523..13697646 | 557..680 | 100 | <- | Minus |
| 3R | 13697835..13698038 | 353..556 | 100 | <- | Minus |
| 3R | 13698091..13698281 | 162..352 | 100 | <- | Minus |
| 3R | 13698343..13698487 | 17..161 | 100 | | Minus |
| 3R | 13696438..13696768 | 1255..1585 | 100 | <- | Minus |
| 3R | 13696827..13697227 | 854..1254 | 100 | <- | Minus |
| 3R | 13697292..13697464 | 681..853 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:52 Download gff for
BS23523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9523014..9523186 | 681..853 | 100 | <- | Minus |
| arm_3R | 9523245..9523368 | 557..680 | 100 | <- | Minus |
| arm_3R | 9522160..9522490 | 1255..1585 | 100 | <- | Minus |
| arm_3R | 9522549..9522949 | 854..1254 | 100 | <- | Minus |
| arm_3R | 9523557..9523760 | 353..556 | 100 | <- | Minus |
| arm_3R | 9523813..9524003 | 162..352 | 100 | <- | Minus |
| arm_3R | 9524065..9524209 | 17..161 | 100 | | Minus |
BS23523.pep Sequence
Translation from 16 to 1584
> BS23523.pep
MCGPYPRRRRYYQIREFQMASSADELESEDPDDELELDDSEPPTRAEDLP
KRLYDINEADADSKAVNLEQLTIKEEDAWWNQVPLNNLDLSSNTLTHISP
KIENLQSLTVLTLHDNALVELPPEIGKLEKLVRLNVSHNKLSQLPRAMYS
LPELRHLNISYNEFVELNPDISDLHMLEFLDGGHNNIQSLPGGIGFLVRL
TALLLPYNHIKELPPDLVNMRSLQKIDLMHNDLTSLPEDMGLLRKLDCLY
LQHNDILELPEFEGNEALNELHASNNFIKIIPKAMCSNLPHLKILDLRDN
KITELPDELCLLRNLNRLDVSNNTISVLPVTLSSLAHLISLQVEGNPIKT
IRRDILQCGTTRILKTLHDRAVAKAKEEGGGVDDASTSAGISVTRLRGGQ
MDDGDIPGNFPDSFHHQQQQNGFQCPCSYPCQQQQMQQQFCVYEPLRNCQ
EYDRQTQGRIYEPENYQQQHQNGSLRSLFVQQQQQRMEYPYPGYFMYQQQ
QQQQFSYEQDPSSRSAVHPRWV*
BS23523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-PI | 522 | CG9611-PI | 1..522 | 1..522 | 2756 | 100 | Plus |
| f-cup-PC | 522 | CG9611-PC | 1..522 | 1..522 | 2756 | 100 | Plus |
| f-cup-PD | 474 | CG9611-PD | 1..474 | 49..522 | 2496 | 99.8 | Plus |
| f-cup-PG | 759 | CG9611-PG | 79..552 | 49..522 | 2495 | 99.8 | Plus |
| f-cup-PF | 802 | CG9611-PF | 122..595 | 49..522 | 2495 | 99.8 | Plus |
| f-cup-PG | 759 | CG9611-PG | 549..756 | 145..370 | 187 | 28.6 | Plus |
