BS23525.complete Sequence
1511 bp assembled on 2011-02-07
GenBank Submission: KX804685
> BS23525.complete
GAAGTTATCAGTCGACATGGACGGCAGCAGTCGTAGTTCCATGGATACCG
ACATGGAAATACAGAAGTTGCCAGTGAAACGGCACTTGCCGGTGACCAAA
GGCCATGGGTGTGTTAAAAATAAGTGCCGCCGAAATCTAGACGAGATGTC
CATCCAACAGTTTTCCGACTCATCCTCTCAGTCGGAGGGCGATGGCGAGG
AGGACTCCAATGATGCCGACGACGAGGAGTATCAGCAGCCCGAGTGGACG
GGTCGCAAAAGGCCGCCGCTGGTCTATCTCGAGTTGGGCGATAAAATCAT
TATCGTTAGGAACGAGCCACAGCCCAACGTCAAGCTGGAAGACGATGTGC
AACTTAAAACGAAGATGCACAAATTTTTGGGTCTGATACCATCACGCCGC
AAGCTCTACAATCCTGCGGTGGTTTACGATATGAAGCCGGAGGATATTGA
GAATATCAATTGTGTCGTCAATTCATCCCATGCGTCCGCAGAGCCATTTA
CTCCATCAGCCGAGCAACCAATTCGTCCGAAAACAATGATGACATCCACT
TGGTCAAAGCTTAATTTGTCGAATATCGATGAACCGACCCCTGAGGAGAG
CCAGGCTAAAAGCAAAAATGACTTTGAGCTCTGGTCCATTGCATTCTCCT
TTGATCAGTGCACCCCGGACTTGCATAAGGAGCCCATTGATCTTATCGAT
TTACCCAACGAAGAGCAGTTGGCCGCCAACTGCCGACGTCACAAGAGCAG
TGTGCCATGCCTGGAGCGGCATCCAAAGTTCTACGGATTCGTTCGTTCGC
TCAGCCCTTCGATTTCGCTCAATATGTGCCATCCACTGGCGCTCACCTAC
AGGCAAAACAATTTCAAAATCTGCAAGGTGGCACTGGCCAAAGTGCTGTT
CAACATCTTCAACCACGCGATCTTCCACTGTGGCCTTCAGGTGCCCATTG
TTTGGAAGCACGCAATGCACACGCGATGCACATGCCAGCTGACCGTCGAT
GCCCATGGTAAGCGCAGAGCCAAGATTCTACTTCTGCGGAGTATAAAGAC
TACGGCGGAGCTAATCCGCTGCCTGCTGCACGAGATGTGCCACGTGGCGG
CATTTGTGTTCAATCGGGAGTTGGGTCACGGCGACAATTGCCGCAGGTGG
GCCTACCAGGCGAAGATGGCCCTGCCGGAGGCACCCACCATCGAGGACAA
CTGCATAGATAGCTTCAAGTACACCTGCACTATGTGCACCCGATGCTCCT
ACGGCGTGGCCGACTTGAGCATGCAGAACCTACGTTGCTACTACTGCCAG
TTCGAGGTGAGCGTGAAGAACGTTTGGAAGTCAGAGATGTACGATTGGAC
CCGGTCAGATCCGACGATGACACCGTTCAAGTGCTTCATTTGGGACAGGT
ACTTGCAGCTGGGCGAGCAGGGAGCCAACACGCACTCCACGAATATGGCG
TTGCTCAACGAGGAGTTCATGAGACTGAACTCCACAATGGATTAGAAGCT
TTCTAGACCAT
BS23525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11322-RB | 1443 | CG11322-PB | 1..1443 | 53..1495 | 7185 | 99.9 | Plus |
| CG2694-RD | 2469 | CG2694-PD | 1654..2435 | 677..1461 | 1505 | 79.7 | Plus |
| CG2694-RB | 2022 | CG2694-PB | 1207..1988 | 677..1461 | 1505 | 79.7 | Plus |
| CG2694-RD | 2469 | CG2694-PD | 1228..1376 | 266..414 | 325 | 81.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11322-RB | 1765 | CG11322-RB | 99..1579 | 17..1497 | 7345 | 99.7 | Plus |
| CG2694-RD | 3066 | CG2694-RD | 1705..2486 | 677..1461 | 1505 | 79.7 | Plus |
| CG2694-RB | 3152 | CG2694-RB | 1791..2572 | 677..1461 | 1505 | 79.7 | Plus |
| CG2694-RD | 3066 | CG2694-RD | 1279..1427 | 266..414 | 325 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6758050..6759530 | 1497..17 | 7345 | 99.7 | Minus |
| X | 23542271 | X | 2716233..2716706 | 677..1150 | 960 | 80.2 | Plus |
| X | 23542271 | X | 2716768..2717074 | 1152..1461 | 555 | 79.4 | Plus |
| X | 23542271 | X | 2715807..2715955 | 266..414 | 325 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:12:59 has no hits.
BS23525.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-07 11:04:27 Download gff for
BS23525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11322-RB | 99..1577 | 17..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:41 Download gff for
BS23525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11322-RB | 99..1577 | 17..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:32 Download gff for
BS23525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11322-RB | 99..1577 | 17..1495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:32 Download gff for
BS23525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6758052..6759530 | 17..1495 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:41 Download gff for
BS23525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6758052..6759530 | 17..1495 | 99 | | Minus |
BS23525.pep Sequence
Translation from 16 to 1494
> BS23525.pep
MDGSSRSSMDTDMEIQKLPVKRHLPVTKGHGCVKNKCRRNLDEMSIQQFS
DSSSQSEGDGEEDSNDADDEEYQQPEWTGRKRPPLVYLELGDKIIIVRNE
PQPNVKLEDDVQLKTKMHKFLGLIPSRRKLYNPAVVYDMKPEDIENINCV
VNSSHASAEPFTPSAEQPIRPKTMMTSTWSKLNLSNIDEPTPEESQAKSK
NDFELWSIAFSFDQCTPDLHKEPIDLIDLPNEEQLAANCRRHKSSVPCLE
RHPKFYGFVRSLSPSISLNMCHPLALTYRQNNFKICKVALAKVLFNIFNH
AIFHCGLQVPIVWKHAMHTRCTCQLTVDAHGKRRAKILLLRSIKTTAELI
RCLLHEMCHVAAFVFNRELGHGDNCRRWAYQAKMALPEAPTIEDNCIDSF
KYTCTMCTRCSYGVADLSMQNLRCYYCQFEVSVKNVWKSEMYDWTRSDPT
MTPFKCFIWDRYLQLGEQGANTHSTNMALLNEEFMRLNSTMD*
BS23525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11322-PB | 480 | CG11322-PB | 1..480 | 13..492 | 2604 | 100 | Plus |
| CG2694-PB | 673 | CG2694-PB | 130..673 | 4..492 | 1437 | 55.9 | Plus |
| CG2694-PD | 822 | CG2694-PD | 279..822 | 4..492 | 1437 | 55.9 | Plus |
| CG2694-PA | 825 | CG2694-PA | 282..825 | 4..492 | 1437 | 55.9 | Plus |
| CG14814-PD | 1030 | CG14814-PD | 542..950 | 40..433 | 259 | 24.6 | Plus |
